DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt3

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_057872.3 Gene:Syt3 / 20981 MGIID:99665 Length:587 Species:Mus musculus


Alignment Length:516 Identity:128/516 - (24%)
Similarity:187/516 - (36%) Gaps:123/516 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 DSSSSSSGHSEPEDEVDTGVGIGVGVVGGGMAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKL 272
            |...|:.|......::..|||: .|:||||.....||.                     ||...|
Mouse    86 DKGGSAVGGGPLRKDLAPGVGL-AGLVGGGGHHLGASL---------------------GGHPLL 128

  Fly   273 SNSFFFNRQQSQRP------------SECPEYDSVSMSKLRRE--SSFLRRGSVSSSWS--ISDS 321
            .............|            ||.||...:.|......  :|.:..|...|..|  :...
Mouse   129 GGPHHHGHTAHHPPFAELLEPGGLGGSEPPEPSYLDMDSYPEAAVASVVAAGVKPSQTSPELPSE 193

  Fly   322 SGSGSN-----NSGNSQTQSQYQQHQQQLQQHCRDPLL--------------------------- 354
            .|:||.     .||.....:|..|....|....|.|.|                           
Mouse   194 GGTGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTTQADPSTEERPPALPLP 258

  Fly   355 ---------------------------------------GWLEIAISYREAFHSLDCTMVRARDL 380
                                                   |.:..|:.|......|...:::|.||
Mouse   259 LPGGEEKAKLIGQIKPELYQGTGPGGRRGGGSGEAGAPCGRISFALRYLYGSDQLVVRILQALDL 323

  Fly   381 PAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVA 445
            ||.|:.|.:|||.|:.:: |:...|:    :||...||.||.||||.|| .|...||....::.:
Mouse   324 PAKDSNGFSDPYVKIYLL-PDRKKKF----QTKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFS 382

  Fly   446 LFDDDKYG-HDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTK 509
            ::|.|::. ||.:|  :|.|..:...::.....||. .|.....:|.|.   .|::..||||...
Mouse   383 VYDFDRFSRHDLIG--QVVLDNLLELAEQPPDRPLW-RDILEGGSEKAD---LGELNFSLCYLPT 441

  Fly   510 RRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPH 574
            ...|.|.:.:..||.|||..|.|||:||..|..:..:.||.|||:|..||||.|||...|:.:|.
Mouse   442 AGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 506

  Fly   575 DLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGER-LQQWLDCIRLPDHFHEKWHCLAPD 634
            .:....|.:.|.|.|....|:.:|..::|.::.... .:.|.:.:..|....|.||.|..:
Mouse   507 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 40/189 (21%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 45/132 (34%)
Syt3NP_057872.3 Cysteine motif. /evidence=ECO:0000269|PubMed:10531343 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..258 13/74 (18%)
C2A_Synaptotagmin-1-5-6-9-10 297..421 CDD:176031 42/132 (32%)
C2B_Synaptotagmin-3-5-6-9-10 430..564 CDD:176048 46/133 (35%)
Blue background indicates that the domain is not in the aligned region.

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