DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and cla-1

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001294148.2 Gene:cla-1 / 177539 WormBaseID:WBGene00018468 Length:8922 Species:Caenorhabditis elegans


Alignment Length:137 Identity:39/137 - (28%)
Similarity:65/137 - (47%) Gaps:11/137 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   497 NGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSS-DPFVKIQLKPDAHKNKKHKTSVKWRTLN 560
            :|.:.:||.|:...| ||..:.:...|.:.|.:.|: :||||:.|.|....:.|.:|.....:..
 Worm  8715 HGHIQVSLGYDGNSR-LVAKIIRARGLKSRDQSRSAPNPFVKVYLLPGRKVSHKRRTRFVDSSCA 8778

  Fly   561 PIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQL-----GAQSKGER---LQQWLDC 617
            |.:|:...::.:||.||...|..||.|......:..||::|:     .|.:.|.|   ||...| 
 Worm  8779 PEWNQVLEYQVAPHTLNTMFLEFTVCDYQRDVDDLPLGNVQIPLADKSAINTGPRWYPLQGSYD- 8842

  Fly   618 IRLPDHF 624
            ..:|.|:
 Worm  8843 QPIPQHY 8849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000
C2B_Rabphilin_Doc2 499..631 CDD:176030 38/135 (28%)
cla-1NP_001294148.2 PDZ_RIM-like 8565..8658 CDD:467198
C2A_RIM1alpha 8714..8838 CDD:175997 34/123 (28%)
Blue background indicates that the domain is not in the aligned region.

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