DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and sytl5

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_012813070.1 Gene:sytl5 / 100496000 XenbaseID:XB-GENE-982310 Length:814 Species:Xenopus tropicalis


Alignment Length:822 Identity:184/822 - (22%)
Similarity:299/822 - (36%) Gaps:251/822 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SSKTS----EPLRPEEQEAIISVIRRNEEIEVAERQRVGRL------VERVEKIKQHAVERGPNC 87
            ||||.    ..|..:|:::|::|:.|::.::..:.:||.||      ::|....:.|..::....
 Frog     2 SSKTEIINFSFLSEQEKKSILTVLERDDLLKKTDGKRVRRLKNELLEIQRRGNKRHHVRQQNSKI 66

  Fly    88 CRLCGDTFGILRPQRILCEDCRQSVCTKCSVDINIRYHTSERSREIWLCRICSETREMWKKSGAW 152
            |..|..:.|::..:..||..|.|.||..|.|.:         ....|.|.:|::..::...:|.|
 Frog    67 CARCRKSLGLIFDRGDLCHVCHQRVCKACRVVV---------KDGKWKCTVCAKIAQLKLTTGDW 122

  Fly   153 F-------FK---------------------GLPKYDMPRSASATPI-PNPGPGSM-------AG 181
            |       ||                     ..|..|:..|....|. .|...||:       ..
 Frog   123 FCEERGKRFKNGTVLGSDIVRKSIMRKIPAVSKPDRDVEDSGKQLPANENVQNGSVLENKSAKGE 187

  Fly   182 DTRAV------QSCHATPTRPA--RVKKL--------------------------TIRVN-DSSS 211
            |.|::      ||.|:..:.|.  |:..|                          .::|| .|.|
 Frog   188 DGRSIRSDIDNQSLHSNRSMPRSDRISNLFDKMTGKKAKNEEDDAQSLRSMRSDRKVKVNVHSES 252

  Fly   212 SSSGHSEPE------------------------------DEVDTGVGIGVGVVGGGMAKGIASTR 246
            ..:..:|.|                              |.:|||       |....:||.|.:.
 Frog   253 LQAAVTEQENTDMISQASFKVDVRSESRPGSSLSARGSVDSLDTG-------VSSPKSKGNAPSS 310

  Fly   247 LQREDSFRLRAYGSI--------------------RSFIDGGERKLSN-----SFFFNRQQSQRP 286
            .|   |..:...|::                    ||.:..|.:..|:     |....|:.|..|
 Frog   311 YQ---SSSINVIGTLPARQSSPTASMHSAASNSHSRSGVQNGTKTSSSIPEDMSKGHERRASATP 372

  Fly   287 S------------ECPEYD-SVSMSKLRRESSFLRRGSVSSSWSIS-----------DSSGSGSN 327
            |            ...||| |...::..:||..:|..||....:..           |..|..:|
 Frog   373 SLVISRASLSSEQSKSEYDLSGHFTEENQESISMRSISVPDYLNKDPEYIDKIDEDFDDLGPSTN 437

  Fly   328 --NSGNSQTQSQYQQHQQQLQQHCRDP-------------------LLGWLEIAISYREAFHSLD 371
              .|.|:.|.|..:.....:.....|.                   :.|.:.:.|:|.....:|:
 Frog   438 LTKSMNAHTLSDRKWTHLNVPDADADTRSLTSISLYSETGDYGNLRITGEILLNINYSYKTGALN 502

  Fly   372 CTMVRARDLPAMD-AAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPE 435
            ..:...|:|...| .....|||.|..:: |:...:..|  :||....|.:|:|||||::| :...
 Frog   503 VVVKNCRNLAVADEKKNRTDPYVKAYLL-PDKSRQSKR--KTKIKTNTTDPDFNETLKYV-ISHT 563

  Fly   436 ELGNSLIYVALFDDDKYG-HDFLGAAKVCLSTVH--------------------STSQYRISVPL 479
            :|....:.:.::.:|::| :.|||...:.|.:.:                    .|.||:..:.:
 Frog   564 QLETRTLQLTVWHNDRFGRNSFLGEVDIPLDSCNFENQEDECFQLQPKMDLASDVTLQYKGEITV 628

  Fly   480 GVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALV---------VNVKQCINLMAMDNNGSSDPF 535
            |:  :|. ..|.....|..|:.....:...::|.|         |.:|...||.||.:.||||.|
 Frog   629 GL--RYI-TPEKNLTLPLDKVAEKKSFRKSKKANVKVPSGGLVEVLIKNAKNLTAMKSGGSSDTF 690

  Fly   536 VKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEA-SPHDLNKEMLILTVWDKDLGKSNDFLGS 599
            ||..|.||.:|:.||||.|..:|:||.:|..|.|.: ...||:...:.||||.|:...||.|||.
 Frog   691 VKGYLLPDNNKSTKHKTPVVKKTVNPEWNHTFTFASLQTSDLSNVCVELTVWGKESLTSNVFLGG 755

  Fly   600 LQLG---AQSKGERLQQWLDCIRLPDHFHEK--WHCLAPDNP 636
            :.||   ..|.|: :..|:|     .|..|:  |..:. |||
 Frog   756 VCLGCGSGVSYGD-IVDWMD-----SHGEEQFLWQKMM-DNP 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710 23/116 (20%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 33/144 (23%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 52/146 (36%)
sytl5XP_012813070.1 PHD_SF 11..123 CDD:473978 26/120 (22%)
FYVE_Slp5 65..111 CDD:277305 14/54 (26%)
C2A_SLP-4_5 485..609 CDD:175995 30/127 (24%)
C2B_SLP_1-2-3-4 623..801 CDD:175987 59/178 (33%)

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