DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and rph3a

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_031748610.1 Gene:rph3a / 100487950 XenbaseID:XB-GENE-5881709 Length:703 Species:Xenopus tropicalis


Alignment Length:226 Identity:42/226 - (18%)
Similarity:76/226 - (33%) Gaps:72/226 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   701 PSLVQSLTKYTKVFMVLGAQRTPACLYESSSAQ--CEKPSGY--QWLDNVTDTTYAFTKFNEDQP 761
            |.|...:.::.::...|||......::|:..|.  |..|..:  .|..|...        ||.|.
 Frog    17 PELRGVIDRWAEILCDLGATYPWVQIFENKGAMMGCSNPHPHCQIWASNFLP--------NEAQT 73

  Fly   762 DTSPE----QPEGCVGVLVY--TDPTKRDKELV----WSLSCNDAQSAHQVVLKLVVCGHEGVCP 816
            :...:    :..|...:|.|  .:.|::::.:|    |                |||..:..|.|
 Frog    74 EERTQRQYLREHGEPMLLDYCRLEETRKERVVVANEHW----------------LVVVPYWAVWP 122

  Fly   817 EESTIPPPSTQSTTTMKSTTTATTSMSTTKKVCAKSDLKCANGWTSFNRTSTNPFCFKVISSYNQ 881
            .::.:.|                     .:.|....||      :|..|.|......:::|.|:.
 Frog   123 FQTLLLP---------------------RRHVLRLQDL------SSEERDSLASIMKRLLSKYDN 160

  Fly   882 SYEQSEALC-----AASGGYLSGVENITEYQ 907
            .:|.|....     |.:|.||.  |:.:.:|
 Frog   161 LFEISFPYSMGWHGAPTGQYLG--EDCSHWQ 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000
C2B_Rabphilin_Doc2 499..631 CDD:176030
rph3aXP_031748610.1 FYVE_RP3A 92..171 CDD:277301 20/121 (17%)
C2A_Rabphilin_Doc2 403..526 CDD:176000
C2B_Rabphilin_Doc2 562..694 CDD:176030
Blue background indicates that the domain is not in the aligned region.

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