DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and syt1

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_017947750.1 Gene:syt1 / 100037879 XenbaseID:XB-GENE-5752629 Length:425 Species:Xenopus tropicalis


Alignment Length:362 Identity:107/362 - (29%)
Similarity:172/362 - (47%) Gaps:38/362 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 FNRQQSQRPSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQ 342
            |.::..::..|....::::|..::      ..|......::.|..........:.:.:.|.::.:
 Frog    86 FKKKNKKKGKEKGGKNAINMKDVK------DLGKTMKDQALKDDDDDAETGLTDGEDKEQPKEVE 144

  Fly   343 QQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYT 407
            :          ||.|:.::.|....:.|...:::|.:|||:|..|.:|||.|| .:.|:...|: 
 Frog   145 K----------LGKLQYSLDYDFQNNQLMVGIIQAAELPALDMGGTSDPYVKL-FLMPDKKKKF- 197

  Fly   408 RWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG-HDFLGAAKVCLSTV---H 468
               .||...||.||.|||...| .|...|||...:.:.::|.|::. ||.:|..||.::||   |
 Frog   198 ---ETKVHRKTLNPVFNEQFTF-KVPYAELGGKTLVLTVYDFDRFSKHDVIGDVKVPMNTVDFGH 258

  Fly   469 STSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSD 533
            .|.::|..|          :||..:....|.:..||.|......|.|.:.:..||..||..|.||
 Frog   259 VTEEWRDLV----------SAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSD 313

  Fly   534 PFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKD-LGKSNDFL 597
            |:|||.|..:..:.||.||::|..||||.|||.|.||.....:.|..:::||.|.| :|| ||.:
 Frog   314 PYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGK-NDAI 377

  Fly   598 GSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCLAPD 634
            |.:.:|..|.|..|:.|.|.:..|.....:||.|.|:
 Frog   378 GKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLTPE 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 44/126 (35%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 51/132 (39%)
syt1XP_017947750.1 Syt1_N 6..114 CDD:409248 4/33 (12%)
C2A_Synaptotagmin-1-5-6-9-10 145..268 CDD:176031 45/148 (30%)
C2B_Synaptotagmin-1 277..412 CDD:176047 52/135 (39%)
Blue background indicates that the domain is not in the aligned region.

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