DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and syt1b

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_021323234.2 Gene:syt1b / 100034471 ZFINID:ZDB-GENE-060503-166 Length:404 Species:Danio rerio


Alignment Length:408 Identity:107/408 - (26%)
Similarity:167/408 - (40%) Gaps:80/408 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 QSCH---------ATPTRPARVKKLTIRVNDSSSSSSGHSEPEDEVDTGVGIGVGVVGGGMAKGI 242
            |||.         |:.:.||.:.:...::..|:.||.....|:.           .....:...|
Zfish    21 QSCRMHEDDAPLAASSSSPASLAQKESKIPGSTISSPTAVHPQT-----------TTADSLVHSI 74

  Fly   243 ASTRLQR-----EDSFRLRAYGSIRSFIDGGERKLS------NSFFFNRQQSQRPSECPEYDSVS 296
            .|..|..     ..|:...|.|.|..||     .||      ....|.:::.:...|..|.:.::
Zfish    75 RSKFLNELHKVPLPSWATAALGFITVFI-----VLSCCLCIFRKMIFKKKKEKGGKEKNEKNDIN 134

  Fly   297 MSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWLEIAI 361
            ||.::.|                     |:..:.:..|.|..::...:.::..:   ||.|...:
Zfish   135 MSNVKEE---------------------GTKQAVHHTTDSDAKEEDSESKEAQK---LGKLLYTL 175

  Fly   362 SYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNET 426
            .|.....:|...::||..|.|||.:|.:|||.|:.:: |:...|:    .||...||..|.|||.
Zfish   176 DYNFTDSTLIVGVIRAEGLAAMDMSGTSDPYVKVYLL-PDKKKKF----ETKVHRKTLEPTFNEH 235

  Fly   427 LQFVGVEPEELGNSLIYVALFDDDKYG-HDFLGAAKVCLSTV---HSTSQYRISVPLGVEDQYSN 487
            ..| .|...|||...:.:.::|.|::. ||.:|..::.::.|   |.|.::|          ...
Zfish   236 FTF-KVPYAELGGKTLVMTVYDFDRFSKHDAIGDVRLQMNKVDFSHLTEEWR----------DLQ 289

  Fly   488 AAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKT 552
            .||..:....|.:.|||.|......|.|.|.:..||..||..|.|||:|||.|..:..:.||.||
Zfish   290 KAEKEEQERLGDICLSLRYVPTAGKLTVVVLEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKT 354

  Fly   553 SVKWRTLNPIYNEEFYFE 570
            ::|..||||.|||.|.||
Zfish   355 TIKKNTLNPYYNESFSFE 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 40/126 (32%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 34/72 (47%)
syt1bXP_021323234.2 None
Blue background indicates that the domain is not in the aligned region.

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