DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment X11Lbeta and Apba3

DIOPT Version :9

Sequence 1:NP_727440.3 Gene:X11Lbeta / 31997 FlyBaseID:FBgn0052677 Length:2139 Species:Drosophila melanogaster
Sequence 2:NP_061228.1 Gene:Apba3 / 57267 MGIID:1888527 Length:571 Species:Mus musculus


Alignment Length:564 Identity:230/564 - (40%)
Similarity:312/564 - (55%) Gaps:100/564 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1657 PALGSPGNGGGSERSAAEMANPGGAVKLSEQEIGT------INGGSVMPLGSGSGTGSGAGSGAG 1715
            |:...|.|    .:||   ..|||.|.|||.|:.|      :.....:|...|.....||.....
Mouse    27 PSENHPSN----TQSA---LGPGGPVTLSEMELDTSSVQELVQQLEALPSDLGGPFPDGAPCPLH 84

  Fly  1716 SGTGTNAAVVANSNANNNVGGGGGG---------------------------------------- 1740
            ..||...|...|.:|...:....||                                        
Mouse    85 IATGQGLATQENPDAGGLLSAEAGGDDLLGLLRDEASSPAQSVPQDPAQTAPRLLQPPEDPDGDP 149

  Fly  1741 ----GNNSSGSGAGSNSNSGEKKVKK------------SKSKE---------------GGAVLIE 1774
                |.::..:.:.|:|:|.|..::.            ::|:|               |...|::
Mouse   150 GWMEGASAEPADSRSSSSSPEPWLETAPLVTQQEPPVGTQSRETLASCPAVTEVPGPCGPEELMD 214

  Fly  1775 GVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKALAPDGDVQPSTEVDLFISTEKIMVLNT 1839
            ||:|.|||||||||:.|..|..||||.||:||:.|:|  ||:|:.||..|||:||||:::.||..
Mouse   215 GVIFGAKYLGSTQLLSERSPAPSTRMGQAQEAMDRVK--APEGETQPMVEVDIFISTKRVKVLAA 277

  Fly  1840 DLKEIMMDHALRTISYIADIGDLVVLMARRRF----VPQDIDDAPKPNRTPKMICHVFESDEAQF 1900
            |.::.:|||||:|||||||||.::|||||||.    .|||     :..|..||:||||.|::||.
Mouse   278 DSQDALMDHALQTISYIADIGPVLVLMARRRLARRTTPQD-----RQRRLYKMLCHVFHSEDAQL 337

  Fly  1901 IAQSIGQAFQVAYMEFLKANGIEDHRFVKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPKAK 1965
            |||:|||||.:||.:||:.|.|:.    .::..|....:......:|:.|...:..:||.:.|..
Mouse   338 IAQAIGQAFSIAYSQFLQENRIDP----SQVGTQPSTAASHPHNGDLDHFCNSQNCREVCIQKRP 398

  Fly  1966 GEILGVVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGLSLVGLPLSTCQTYIKN 2030
            ||.|||.:|||||||:|||.|||||:..|.|.|||.|:|||::.||||.|||||.|:.||..::.
Mouse   399 GEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAINGTSLVGLSLAACQAAVRE 463

  Fly  2031 TKNQTVVKFTVVPCAPVVEVKIKRPETKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINN 2095
            .:..:.|..:::.|.||....|:||..:.||||.|::|:||||||||.||||||||||||||:|.
Mouse   464 VRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVEDGIICSLLRGGAAERGGVRVGHRIIEVNG 528

  Fly  2096 QSVVAVPHEKIVNLLATSVGEILMKTMPTSMFRLLTGQENPIYI 2139
            |||||:||.:|:.|| |...||.:||||.:.:|||||||.|:|:
Mouse   529 QSVVAMPHARIIQLL-TETREIHIKTMPAATYRLLTGQEQPVYL 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LbetaNP_727440.3 PTB_X11 1770..1924 CDD:269919 88/157 (56%)
PDZ_signaling 1957..2042 CDD:238492 45/84 (54%)
PDZ_signaling 2047..2120 CDD:238492 46/72 (64%)
Apba3NP_061228.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..48 9/27 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 67..195 18/127 (14%)
PTB_X11 209..361 CDD:269919 88/158 (56%)
PDZ_signaling 390..475 CDD:238492 45/84 (54%)
PDZ_signaling 480..548 CDD:238492 44/68 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845950
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3605
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002645
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12345
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2607
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.830

Return to query results.
Submit another query.