DRSC/TRiP Functional Genomics Resources

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Protein Alignment X11Lbeta and apba2b

DIOPT Version :9

Sequence 1:NP_727440.3 Gene:X11Lbeta / 31997 FlyBaseID:FBgn0052677 Length:2139 Species:Drosophila melanogaster
Sequence 2:XP_005168985.1 Gene:apba2b / 327160 ZFINID:ZDB-GENE-030131-5371 Length:834 Species:Danio rerio


Alignment Length:826 Identity:315/826 - (38%)
Similarity:405/826 - (49%) Gaps:249/826 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1440 GSNCSS----SANGGMPPPIPERTNLVSAVQRSPSPGPNSPVWLSRHLDGGAGKDLLESGSDNHS 1500
            |.:|:.    ..:|.|.|| |:......||:.          |:.       |:|  ::..|...
Zfish   132 GMDCNDPEYVHPDGRMEPP-PDTDECQEAVEE----------WVE-------GED--DAQGDEDD 176

  Fly  1501 KNHSADEEDVDTDLETDRLLGHQRLDDQGYYDENKSWDRKPRSLLSK------ISPKQQIPSTKT 1559
            .:...|::|.|.::..:.|  .|..|.|.|       |.:|..:|..      ..|.|:      
Zfish   177 DDEEEDDDDDDGEVRCEVL--EQDSDQQLY-------DGRPEPVLDHHHHQHYTDPHQE------ 226

  Fly  1560 RNGYNALLSSTPELPPPI---------------------PPKGQSGLGLG----LTLGAGNGGKL 1599
                        :|||||                     |..|:...|..    .|...||..:.
Zfish   227 ------------QLPPPIEDQEVKDVESSERYCPDQEEEPQVGRDREGYAGDYYATEDNGNSVRA 279

  Fly  1600 LDLVGGMVQRSLSRSSSEHSEKSLS------KMPISGGDLCAGGVDVVASTVAATSATVVASTPA 1658
            ....|   .:.....:.|.:|:.:.      ||.:|.|.|.:|         ...|...:|..||
Zfish   280 SPYRG---HKGTEGETGEEAEEDIDQIVAEIKMSMSMGSLSSG---------TDQSPEELAPDPA 332

  Fly  1659 LGSPGNGGGSERSAAEMA------------------------NP--------------------- 1678
               |.......||..|.|                        ||                     
Zfish   333 ---PSGYQPETRSKPEPAPAPYPQPHRHDGRPKSLNIPPARHNPELQRNFKVRPHTPEDRQRWTQ 394

  Fly  1679 --------GGAVKLSEQEIGTINGGSVMPLGSGSGTGSGAGSGAGSGTGTNAAVVANSNANNNVG 1735
                    .||.:..:|:...:||    ||                             .|||| 
Zfish   395 DQVREQMSNGAEQPRKQQRSDLNG----PL-----------------------------ENNNV- 425

  Fly  1736 GGGGGGNNSSGSGAGSNSNSGEKKVKKSKS------------KEGGAVLIEGVLFRAKYLGSTQL 1788
                                 .:..||:.|            .|.   ||:|::|.|.|||||||
Zfish   426 ---------------------TEPTKKTASFPSFVDVPGPCEPED---LIDGIIFAANYLGSTQL 466

  Fly  1789 VCEGQPTKSTRMMQAEEAVSRI-----------KALAPDGDVQPSTEVDLFISTEKIMVLNTDLK 1842
            :.|..|:|:.|||||:|||||:           ||.:|:||.|..|||||||||::|.|||.|.:
Zfish   467 LSERNPSKNIRMMQAQEAVSRVKRVQKAAKIKKKAQSPEGDAQTLTEVDLFISTQRIKVLNADTQ 531

  Fly  1843 EIMMDHALRTISYIADIGDLVVLMARRRF---VPQDIDD----APKPNRTPKMICHVFESDEAQF 1900
            |.|||:||||||||||||::||||||||.   ..||..:    ||:..:..|||||||||::||.
Zfish   532 ETMMDNALRTISYIADIGNIVVLMARRRMPRTASQDCIETTPGAPEAKKQYKMICHVFESEDAQL 596

  Fly  1901 IAQSIGQAFQVAYMEFLKANGI--EDHRFVKEMDYQEVLNSQEIFGDELEIFAKKELQKEVVVPK 1963
            |||||||||.|||.|||:||||  ||   :.:.:|.:::|:||::.|:|..|:..:..||:.:.|
Zfish   597 IAQSIGQAFSVAYQEFLRANGINPED---LSQKEYSDIINTQEMYNDDLIHFSNSDNCKELQLEK 658

  Fly  1964 AKGEILGVVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGLSLVGLPLSTCQTYI 2028
            .||||||:|||||||||:||||::||:|:.|.|||.|:|:||||:::||..|||||||:|||..|
Zfish   659 QKGEILGIVIVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINNTSLVGLPLATCQGII 723

  Fly  2029 KNTKNQTVVKFTVVPCAPVVEVKIKRPETKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEI 2093
            |..|||..||..:|.|.||..|.||||:.|||||||||||:||||:|||||||||||||||||||
Zfish   724 KGLKNQVQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEI 788

  Fly  2094 NNQSVVAVPHEKIVNLLATSVGEILMKTMPTSMFRLLTGQENPIYI 2139
            |.|||||..|||||..|:.|||||.|||||.:|||||||||.|:||
Zfish   789 NGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPMYI 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LbetaNP_727440.3 PTB_X11 1770..1924 CDD:269919 103/173 (60%)
PDZ_signaling 1957..2042 CDD:238492 54/84 (64%)
PDZ_signaling 2047..2120 CDD:238492 57/72 (79%)
apba2bXP_005168985.1 PTB_X11 447..620 CDD:269919 104/175 (59%)
PDZ 653..734 CDD:278991 52/80 (65%)
PDZ 746..817 CDD:278991 57/70 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590660
Domainoid 1 1.000 175 1.000 Domainoid score I3583
eggNOG 1 0.900 - - E1_KOG3605
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 530 1.000 Inparanoid score I1184
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002645
OrthoInspector 1 1.000 - - mtm6563
orthoMCL 1 0.900 - - OOG6_104247
Panther 1 1.100 - - O PTHR12345
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2607
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.780

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