DRSC/TRiP Functional Genomics Resources

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Protein Alignment X11Lbeta and sdcbp2

DIOPT Version :9

Sequence 1:NP_727440.3 Gene:X11Lbeta / 31997 FlyBaseID:FBgn0052677 Length:2139 Species:Drosophila melanogaster
Sequence 2:NP_997856.1 Gene:sdcbp2 / 325004 ZFINID:ZDB-GENE-030131-3727 Length:299 Species:Danio rerio


Alignment Length:305 Identity:67/305 - (21%)
Similarity:124/305 - (40%) Gaps:41/305 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly  1835 MVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQDIDDA-PKPNRTPKM------ICHV 1892
            |.|...|:::.:|..:|..|..|:.......:.:..:.||..... |.....|.:      :...
Zfish     1 MSLYPSLEDLKVDKVIRAQSQFANATSSTPAITQGAYQPQPATQGMPSSTLYPNLEELGDYMGLS 65

  Fly  1893 FESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHRFVKEMDYQEVLNSQEIFGDELEIFAKKELQ- 1956
            ..|||.|.....:..|.|||...  ...|:                .:.:.|.::.| .:.|:: 
Zfish    66 LNSDEVQRNLALVPVATQVAVPS--SVGGM----------------VRPVTGADMGI-RRAEIRP 111

  Fly  1957 --KEVVVPKAKGEILGVVI--VESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGLSLV 2017
              :||::.|.:...:|:.:  :::|        |...|:.:.:.|....|..|||::.|||.::.
Zfish   112 GLREVILCKDQEGKVGLRLRDIDNG--------VFVQLVQANSPAALAGLRFGDQVLQINGQNVA 168

  Fly  2018 GLPLSTCQTYIKNTKNQTVVKFTVVPCAPVVEVKIKRPETKYQLGFSVQNGVICSLLRGGIAERG 2082
            |.........:|....|.:.  .:|...|.........::...:||..::|.|.||::.|.|.|.
Zfish   169 GWNSDKAHKALKAAAEQRIE--LIVRDRPFQRTITMHKDSSGHVGFIFKSGRITSLVKDGSAARN 231

  Fly  2083 GVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGEILMKTMPTSMF 2127
            |:...|.|.|||.|:|:.:...:|.::|.||...:.:..||..:|
Zfish   232 GLLTEHYICEINGQNVIGLKDTQIKDILTTSPTAMTITIMPKFIF 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LbetaNP_727440.3 PTB_X11 1770..1924 CDD:269919 20/95 (21%)
PDZ_signaling 1957..2042 CDD:238492 18/86 (21%)
PDZ_signaling 2047..2120 CDD:238492 21/72 (29%)
sdcbp2NP_997856.1 PDZ_signaling 113..>173 CDD:238492 16/67 (24%)
PDZ_signaling 198..270 CDD:238492 21/71 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590657
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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