DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9Db and RAB11c

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_172434.1 Gene:RAB11c / 837490 AraportID:AT1G09630 Length:217 Species:Arabidopsis thaliana


Alignment Length:174 Identity:63/174 - (36%)
Similarity:102/174 - (58%) Gaps:12/174 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRM---GRML--QV 62
            :||..||::::|||||||:.||.||:.|:|....:.|:|       ||||...:   ||.:  |:
plant     8 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIG-------VEFATRTLQVEGRTVKAQI 65

  Fly    63 WDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDP 127
            |||:..||::.:.:...|.|.|.|||||:|...:|:|:..|:||:|......:.::|:|||:|..
plant    66 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLK 130

  Fly   128 NHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDIY 171
            :.|.|:.....:||.::.:.|.|.||....||...|.::..::|
plant   131 HLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVY 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 60/163 (37%)
RAB11cNP_172434.1 P-loop containing Nucleoside Triphosphate Hydrolases 1..216 CDD:476819 63/174 (36%)

Return to query results.
Submit another query.