DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9Db and AT5G59840

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_200792.1 Gene:AT5G59840 / 836105 AraportID:AT5G59840 Length:216 Species:Arabidopsis thaliana


Alignment Length:170 Identity:74/170 - (43%)
Similarity:104/170 - (61%) Gaps:3/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTS 66
            :.||...|::::|||||||:|||:||||..||.....|:|:|.:..::|....|:  .||:|||:
plant    10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI--KLQIWDTA 72

  Fly    67 DDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSD-DPNHR 130
            ..|||:.:.....|.|.|||||||:|...||.||..|::.|.:...|.|..:|||||:| |.:.|
plant    73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137

  Fly   131 QVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170
            .|..::|...|....|.|.|.|||:..||.::|.|:|.||
plant   138 AVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDI 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 69/159 (43%)
AT5G59840NP_200792.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 73/167 (44%)

Return to query results.
Submit another query.