DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and rab40c

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001035438.1 Gene:rab40c / 678600 ZFINID:ZDB-GENE-030515-1 Length:279 Species:Danio rerio


Alignment Length:167 Identity:60/167 - (35%)
Similarity:86/167 - (51%) Gaps:3/167 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDT 65
            :..||...|.:::|||.|||..:|....|......:..:.|:|.:..:: ..|.|..: |::|||
Zfish     8 VKSYDYLLKFLLVGDSDVGKGEILDSLQDGSAESPYAYSSGIDYKTTTI-LLDGRRVK-LELWDT 70

  Fly    66 SDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHR 130
            |...||..:..:..|.|.|||||||||:..||..||.|::||....|. |..:||||:......|
Zfish    71 SGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIREIDEHAPG-VPRILVGNRLHLAFKR 134

  Fly   131 QVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLA 167
            ||...|...||.:..:.|.|||.....||.:.|:.|:
Zfish   135 QVPTEQARAYAEKNGMTFFEVSPLCNFNVIESFTELS 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 57/158 (36%)
rab40cNP_001035438.1 Rab40 9..279 CDD:133321 60/166 (36%)
SOCS_Rab40 187..229 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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