DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and RAB1A

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_004152.1 Gene:RAB1A / 5861 HGNCID:9758 Length:205 Species:Homo sapiens


Alignment Length:170 Identity:69/170 - (40%)
Similarity:106/170 - (62%) Gaps:6/170 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGR--MLQVWDT 65
            :||..||::::|||||||:|||:||:|:.:||.:..|:|:|.:..::|..    |:  .||:|||
Human     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD----GKTIKLQIWDT 67

  Fly    66 SDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHR 130
            :..|||:.:.::..|.||||::|||:|..:||.|:..|::||.|...:.|..||||||.|....:
Human    68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 132

  Fly   131 QVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170
            .|.......:|....|.|.|.|||:..||...|.::|.:|
Human   133 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 65/160 (41%)
RAB1ANP_004152.1 Rab1_Ypt1 10..175 CDD:206661 67/167 (40%)
Switch 1. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 34..48 4/13 (31%)
Switch 2. /evidence=ECO:0000269|PubMed:22416225, ECO:0007744|PDB:3SFV, ECO:0007744|PDB:3TKL 66..83 5/16 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..205
Blue background indicates that the domain is not in the aligned region.

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