DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and rab12

DIOPT Version :9

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001018466.1 Gene:rab12 / 553657 ZFINID:ZDB-GENE-050522-555 Length:235 Species:Danio rerio


Alignment Length:167 Identity:69/167 - (41%)
Similarity:99/167 - (59%) Gaps:3/167 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTSDDE 69
            |...::||:|..|||||.|:.||:|:.|.|..:.|||:|.:..:||....::  .||:|||:..|
Zfish    33 DYKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI--RLQIWDTAGQE 95

  Fly    70 RFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSM 134
            ||..:.:...|.|.||:||||||..::|:::..|||.|.:...:...:||||||.|..:.|.:|.
Zfish    96 RFNSITSAYYRGAKGIVLVYDITKQETFEDLPKWMKMIDKYASEDAELLLVGNKLDCESDRAISR 160

  Fly   135 AQGFNYAHRQS-ICFEEVSAKSGRNVYDIFSSLAMDI 170
            .|...:|.|.| :.|.|.|||...||.:||..|..||
Zfish   161 QQAERFASRISGMRFCEASAKDNFNVDEIFLKLVDDI 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 RAB 8..171 CDD:197555 68/164 (41%)
Rab 8..167 CDD:206640 65/159 (41%)
rab12NP_001018466.1 Rab12 36..235 CDD:206699 68/164 (41%)
RAB 36..200 CDD:197555 68/164 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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