DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and rab40b

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_001002524.2 Gene:rab40b / 436797 ZFINID:ZDB-GENE-040718-257 Length:287 Species:Danio rerio


Alignment Length:164 Identity:58/164 - (35%)
Similarity:84/164 - (51%) Gaps:3/164 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTSDD 68
            ||...|.:::|||.|||..:|....|......:...:|:|.:..:: ..|.|..: ||:||||..
Zfish    19 YDFLLKFLLVGDSDVGKGEILASLQDGSSESPYGYNMGIDYKTTTI-LLDGRRVK-LQLWDTSGQ 81

  Fly    69 ERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVS 133
            .||..:..:..|.|.|::||||||:..||..||.|:|||....|. |..:||||:......|||:
Zfish    82 GRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLHLAYKRQVT 145

  Fly   134 MAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLA 167
            ......:..|..:.|.|||.....|:.:.|:.||
Zfish   146 TEHTQAFVERLGVTFFEVSPLCNFNITESFTELA 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 54/158 (34%)
rab40bNP_001002524.2 Rab40 17..194 CDD:133321 58/164 (35%)
SOCS_Rab40 195..237 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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