DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and Rab40

DIOPT Version :10

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:XP_316810.5 Gene:Rab40 / 1277354 VectorBaseID:AGAMI1_013162 Length:262 Species:Anopheles gambiae


Alignment Length:174 Identity:56/174 - (32%)
Similarity:81/174 - (46%) Gaps:21/174 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QYDNPFKIIILGDSGVGKTCLLMRFSDNQF---------TERHRVTVGMDRRECSVEFADWRMGR 58
            :||...|::::|||.|||..:|....|...         |.....|:.:|.:...          
Mosquito     4 EYDYLLKVLLVGDSDVGKQEILSGLDDGSTESPFCSGSGTAHKTTTILLDGKRVK---------- 58

  Fly    59 MLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNK 123
             ||:||||...||..:..:..|.|.||:||||||:..||..::.|:||:....|. |..:||||:
Mosquito    59 -LQIWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGLNRWLKEVEEHAPG-VPKVLVGNR 121

  Fly   124 SDDPNHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLA 167
            ......|||:..|...||.|..:...|:|.....|:.:.|..||
Mosquito   122 LHLAFKRQVAAKQAELYASRNKMACFEISPLCDFNIRESFCELA 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 52/167 (31%)
Rab40XP_316810.5 P-loop containing Nucleoside Triphosphate Hydrolases 3..196 CDD:476819 56/174 (32%)
SOCS 181..223 CDD:470605
Blue background indicates that the domain is not in the aligned region.

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