DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Db and Rab8a

DIOPT Version :9

Sequence 1:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_446450.2 Gene:Rab8a / 117103 RGDID:621144 Length:207 Species:Rattus norvegicus


Alignment Length:167 Identity:72/167 - (43%)
Similarity:101/167 - (60%) Gaps:2/167 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTSDD 68
            ||..||::::|||||||||:|.|||::.|......|:|:|.:..::|....|:  .||:|||:..
  Rat     5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI--KLQIWDTAGQ 67

  Fly    69 ERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVS 133
            |||:.:.....|.|.||:||||||:.|||.||..|::.|.......|..:::|||.|..:.||||
  Rat    68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 132

  Fly   134 MAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170
            ..:|...|....|.|.|.|||:..||.:.|.:||.||
  Rat   133 KERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DbNP_572642.1 RAB 8..171 CDD:197555 70/163 (43%)
Rab 8..167 CDD:206640 66/158 (42%)
Rab8aNP_446450.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 71/166 (43%)
Effector region. /evidence=ECO:0000250 37..45 2/7 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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