DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43347 and Prdm5

DIOPT Version :10

Sequence 1:NP_001138185.2 Gene:CG43347 / 31991 FlyBaseID:FBgn0263072 Length:2684 Species:Drosophila melanogaster
Sequence 2:XP_063142792.1 Gene:Prdm5 / 689788 RGDID:1588700 Length:630 Species:Rattus norvegicus


Alignment Length:465 Identity:112/465 - (24%)
Similarity:170/465 - (36%) Gaps:137/465 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1031 VPAEFELHN--VEPNVTGVFARTEVRAFTKLGPLIGQPVQTGEVREGSDMKWIFEMCEAGADKSY 1093
            ||..|.|.:  |:..: |::....||...|.||..|:.....::.|..|.:.::|:..:..:..|
  Rat     6 VPDRFALKSSRVQDGM-GLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEVRGSKGEVLY 69

  Fly  1094 LLCCDNPNASNWLRFVRPAPSYEERNVNLVSIDRQAYFVSCRDLRNGMELL--YWSDDCN----- 1151
            :|...||..|||||||..|||.|.:|:..:......::::..|:....|||  |...|..     
  Rat    70 ILDATNPRHSNWLRFVHEAPSQERKNLAAIQEGENIFYLAVDDIETDTELLIGYLDSDVEAEEEE 134

  Fly  1152 ----TMWRK---------------------------------------------KHTEKT----- 1162
                ||.|:                                             .|.:.|     
  Rat   135 QQALTMAREGKVDHSKGQLAAGSKGHLGCEEDFACPQCESSFPSEEVLTEHLQSLHQKPTGEKEF 199

  Fly  1163 NCGGCNLKF-------EHPLYY-----------RTHCSVFHDP-SMSLTIRKYH----------C 1198
            .|..|..||       .|.|..           |..||:.:.. |.:|:..::.          |
  Rat   200 KCENCGKKFPVRQALQRHVLSCAARSNLQDSPPRVQCSLCNSLFSSALSFSQHQKACRGDARFVC 264

  Fly  1199 KV--CGEPVLGKDNIMKHAAEKHDG---------------------------KGAYQCQFCSKFF 1234
            ||  ||:.:..||.:.:|....|.|                           ...:.||.|.|.|
  Rat   265 KVDSCGKRLKSKDALKRHRENVHTGDPKRKLICSVCNRRCTSLSSLQEHRKIHEIFDCQECMKKF 329

  Fly  1235 LRLNYLEMHRTYGCASNPNRSRPV-CDFCGRKFCQPQKLKAHIKRMHSDMAEVLRDFQCKLCSKL 1298
            :..|.|:.|..     ..:..||. |:.|.:.|.:..::.|| |.:||:.    :.:|||||.|.
  Rat   330 ISANQLKRHMI-----THSEKRPYNCEICNKSFKRLDQVGAH-KVIHSED----KPYQCKLCGKG 384

  Fly  1299 LGSRAALQRHSKEVHSRNSTVVSCPRCQKLFQNRSNLKIHMLTHSGVRPFKCAEPECNAAFTTKQ 1363
            ...|...:.| |:.||.... ..|..|:.||:...:|:.|:|.|:..|.|||  ..|:|.|..|.
  Rat   385 FAHRNVYKNH-KKTHSEERP-FQCDECKALFRTPFSLQRHLLIHNSERTFKC--HHCDATFKRKD 445

  Fly  1364 CLQFHYKKVH 1373
            .|..|.:.||
  Rat   446 TLNVHVQVVH 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43347NP_001138185.2 PR-SET_PRDM-like 1031..1146 CDD:380932 35/118 (30%)
NR_DBD_like 1198..>1268 CDD:413390 23/99 (23%)
C2H2 Zn finger 1198..1219 CDD:275368 8/22 (36%)
C2H2 Zn finger 1227..1255 CDD:275368 8/27 (30%)
C2H2 Zn finger 1259..1280 CDD:275368 6/20 (30%)
C2H2 Zn finger 1292..1313 CDD:275368 8/20 (40%)
C2H2 Zn finger 1322..1342 CDD:275368 7/19 (37%)
C2H2 Zn finger 1350..1373 CDD:275368 7/22 (32%)
Prdm5XP_063142792.1 None

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