DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43347 and prdm5

DIOPT Version :10

Sequence 1:NP_001138185.2 Gene:CG43347 / 31991 FlyBaseID:FBgn0263072 Length:2684 Species:Drosophila melanogaster
Sequence 2:NP_001002301.2 Gene:prdm5 / 432371 ZFINID:ZDB-GENE-040708-1 Length:634 Species:Danio rerio


Alignment Length:468 Identity:108/468 - (23%)
Similarity:166/468 - (35%) Gaps:139/468 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1031 VPAEFELHNVE-PNVTGVFARTEVRAFTKLGPLIGQPVQTGEVREGSDMKWIFEMCEAGADKSYL 1094
            ||..|.|.:.: .:..|::....|:...|.||..|:....|::.|..|.:.::|:.....|..|:
Zfish     8 VPDRFVLKSSQVQDGMGLYTTRTVKKGEKFGPFAGEKRMLGDLDESMDPRLMWEVRGNKGDVLYI 72

  Fly  1095 LCCDNPNASNWLRFVRPAPSYEERNVNLVSIDRQAYFVSCRDLRNGMELL--------------- 1144
            |...||..:||||||..|||.|::|:..:......::::..|:....|||               
Zfish    73 LDASNPRHANWLRFVHQAPSQEQKNLAAIQDGENIFYLAVDDIETDTELLIGYLDSDMEEEEEDL 137

  Fly  1145 -----------------YWSDDCNTMWRK-------------------KHTEKTN---------- 1163
                             ..|.|...|.:|                   :|.:..:          
Zfish   138 EEEQDIKDEDENSKDSKQLSADTELMIKKEDYPCLLCESSFPSEDVLAEHLQSLHNRGSAEDKEF 202

  Fly  1164 -CGGCNLKF-------EHPLYYRTHCSVFHDPSMSLTI-----------------------RKYH 1197
             |..|..:|       .|.|:.....|...|||.:...                       .::.
Zfish   203 KCRSCGKEFPVRQALQRHLLHCTESSSSSGDPSKAYQCVLCHGSFSSQSSFLQHKEACKGDERFI 267

  Fly  1198 CKV--CGEPVLGKDNIMKHAAEKHDGKGA----------------------------YQCQFCSK 1232
            ||.  ||:....||.:.||....|.| ||                            :.|..|.|
Zfish   268 CKAESCGKRFKSKDALKKHKGNIHIG-GARRKLVCTICNKKCSSSLNLQEHRKVHEVFDCDACDK 331

  Fly  1233 FFLRLNYLEMHRTYGCASNPNRSRP-VCDFCGRKFCQPQKLKAHIKRMHSDMAEVLRDFQCKLCS 1296
            .|:..|.|:.|..     ..:..|| .|:.|.|.|.:..:..|| |.:||:.    :.::||||.
Zfish   332 KFISTNQLKRHMI-----THSEKRPYTCEICSRSFKRLDQATAH-KIIHSED----KPYKCKLCW 386

  Fly  1297 KLLGSRAALQRHSKEVHSRNSTVVSCPRCQKLFQNRSNLKIHMLTHSGVRPFKCAEPECNAAFTT 1361
            |....|...:.| |:.||.... ..|..|:.||:...:|:.|:|.|:..|.|||  ..|:|.|..
Zfish   387 KEFAHRNVYKNH-KKTHSEERP-FQCEECKALFRTPFSLQRHLLIHNNERTFKC--DHCDATFKR 447

  Fly  1362 KQCLQFHYKKVHN 1374
            |..|..|.:.||:
Zfish   448 KDTLNVHIQVVHD 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43347NP_001138185.2 PR-SET_PRDM-like 1031..1146 CDD:380932 34/147 (23%)
NR_DBD_like 1198..>1268 CDD:413390 25/100 (25%)
C2H2 Zn finger 1198..1219 CDD:275368 8/22 (36%)
C2H2 Zn finger 1227..1255 CDD:275368 7/27 (26%)
C2H2 Zn finger 1259..1280 CDD:275368 7/20 (35%)
C2H2 Zn finger 1292..1313 CDD:275368 8/20 (40%)
C2H2 Zn finger 1322..1342 CDD:275368 7/19 (37%)
C2H2 Zn finger 1350..1373 CDD:275368 7/22 (32%)
prdm5NP_001002301.2 PR-SET_PRDM5 4..130 CDD:380967 34/121 (28%)
C2H2 Zn finger 171..192 CDD:275368 1/20 (5%)
C2H2 Zn finger 204..223 CDD:275368 4/18 (22%)
C2H2 Zn finger 240..291 CDD:275368 8/50 (16%)
COG5048 266..626 CDD:227381 60/210 (29%)
C2H2 Zn finger 301..321 CDD:275368 0/19 (0%)
C2H2 Zn finger 326..346 CDD:275368 7/24 (29%)
C2H2 Zn finger 354..374 CDD:275368 7/20 (35%)
C2H2 Zn finger 382..402 CDD:275368 8/20 (40%)
C2H2 Zn finger 410..430 CDD:275368 7/19 (37%)
C2H2 Zn finger 438..459 CDD:275368 7/22 (32%)
C2H2 Zn finger 467..487 CDD:275368
C2H2 Zn finger 495..515 CDD:275368
C2H2 Zn finger 523..543 CDD:275368
C2H2 Zn finger 551..571 CDD:275368
C2H2 Zn finger 579..599 CDD:275368
C2H2 Zn finger 608..625 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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