DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmr and Mes2

DIOPT Version :10

Sequence 1:NP_572637.2 Gene:Hmr / 31988 FlyBaseID:FBgn0001206 Length:1413 Species:Drosophila melanogaster
Sequence 2:NP_730768.1 Gene:Mes2 / 40514 FlyBaseID:FBgn0037207 Length:437 Species:Drosophila melanogaster


Alignment Length:152 Identity:36/152 - (23%)
Similarity:64/152 - (42%) Gaps:35/152 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VSDTIGQKTNGVDDDKA--------------PNPFSRCT-YPGSRDGGILQTYRAERL-LIALVR 64
            ||..:...|:.:.|..|              |:|.:..| .|..:...:::...:::| ||.:|.
  Fly     4 VSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIKKLVRRNASDKLKLIQMVH 68

  Fly    65 RQPLLYDARHPKFRDVAQREKQ--WKKIASRLATNATNCKRSWSALRYKYQR---HVRRLRN--- 121
            ..|:|:|:|.|.|:. |:.||.  |:.|............|::.:||..|:|   ||:.:.|   
  Fly    69 DNPILWDSRLPNFKG-AEEEKNRAWEHIGREFNAPGRRVARAFKSLRESYRRELAHVKLMGNGFK 132

  Fly   122 ----------FHRSAIQKDRAA 133
                      |.|..|::.:.|
  Fly   133 PKWSLYEAMDFLRDVIRERKGA 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmrNP_572637.2 MADF_DNA_bdg 59..149 CDD:463144 26/93 (28%)
GT1 213..295 CDD:474047
PHA03247 <474..864 CDD:223021
Mes2NP_730768.1 MADF 62..149 CDD:214738 24/87 (28%)
Blue background indicates that the domain is not in the aligned region.

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