DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmr and CG12768

DIOPT Version :10

Sequence 1:NP_572637.2 Gene:Hmr / 31988 FlyBaseID:FBgn0001206 Length:1413 Species:Drosophila melanogaster
Sequence 2:NP_649431.1 Gene:CG12768 / 40513 FlyBaseID:FBgn0037206 Length:429 Species:Drosophila melanogaster


Alignment Length:426 Identity:87/426 - (20%)
Similarity:149/426 - (34%) Gaps:133/426 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 RCNRLQRRLIEAVSAYPLLYDSTCTGYQNTRHRFLI-WSAISNEVHDKATKLMKCWLKLQTRYEW 269
            |.|..:|||||.|...|:|:|.....|:.:..|..| |:.:....:....::.:.:..|:..:..
  Fly     5 RHNIEKRRLIELVRLNPILWDCRLPHYKRSDKRKAIKWNELGRLFNVNGERVQRTFTSLREIFRR 69

  Fly   270 ELIHRPRHIGTSELCRLMDFMEPHVQRMRGTVCKSSKYLQNGWHEPIENFHTVMALITTMRNMPE 334
            ||.|                     ::|.||....||:          .::..||.:..:     
  Fly    70 ELNH---------------------EKMLGTTRFKSKW----------EYYDAMAFLKEV----- 98

  Fly   335 LVQLTEDSLHNKVKPPRYDEFWQKVGMEVMCSHEHCEVTWLVLRAFYHELQAVRSSGYQLQDKWF 399
               :.|.....::|....|.  ..|......::.:|     |.|...:.    .||...|.:..:
  Fly    99 ---IRERKSRERIKHGSLDS--APVATGSSNNNNNC-----VSRNSSNN----NSSSAALDEYQY 149

  Fly   400 FEGSMGLALTPVTSRSTARPALKRTANGAIPVAGEPPAKTPVPVRMPLAIVYPSTSKGSSTSMTN 464
            |..|     .|  :....:|.|            :|..|:.:||.:|            |.|:|.
  Fly   150 FAPS-----DP--NNPNNQPQL------------QPEPKSSLPVTIP------------SLSLTL 183

  Fly   465 SA-----------STATSIGP--TFTNVRRSSGPVINNTSTAAAATNSVSSSVSPDQALPKFVIP 516
            |.           ..|..:.|  |.|::::.|.|     ::...||.:..:..||.|.|      
  Fly   184 SQLPVALQQQAQHLQALQLQPDVTLTSLQKQSLP-----TSLTNATPAPLAQTSPAQVL------ 237

  Fly   517 KITSAISVGSGYMIPLKFVPNVRILPKPAATMG-------TGVSPIATTNQMAGPNAKPPEVRPQ 574
              :|:.|..|.        |::.|..:|.:..|       ||..|.||..::|       .:|||
  Fly   238 --SSSRSCSSS--------PSIYIKDEPCSPAGGCPEEVMTGNGPEATRKKLA-------TIRPQ 285

  Fly   575 ITQGPGLQVKLHTKPQMASRPQMAPVVPRTVIRTTN 610
            ..|....:::|.| |:.:|....:|  |..:|...|
  Fly   286 TKQQLKARLQLPT-PKNSSSYATSP--PHLIINANN 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmrNP_572637.2 MADF_DNA_bdg 59..149 CDD:463144
GT1 213..295 CDD:474047 16/82 (20%)
PHA03247 <474..864 CDD:223021 36/146 (25%)
CG12768NP_649431.1 MADF 12..100 CDD:214738 23/126 (18%)
Blue background indicates that the domain is not in the aligned region.

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