DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmr and gNacalpha

DIOPT Version :10

Sequence 1:NP_572637.2 Gene:Hmr / 31988 FlyBaseID:FBgn0001206 Length:1413 Species:Drosophila melanogaster
Sequence 2:NP_608561.2 Gene:gNacalpha / 33279 FlyBaseID:FBgn0031296 Length:347 Species:Drosophila melanogaster


Alignment Length:253 Identity:59/253 - (23%)
Similarity:92/253 - (36%) Gaps:79/253 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1119 KRCKMHEALTSSDHIDKTKFTPSKLLTG----FSKEPKPWETEEAKRLLTGKLNSVRSTETLTQI 1179
            |:.||.:|...:...:|.|....|..|.    .:|| ||.|........:||....::|:     
  Fly     3 KKQKMKKAAQMATAAEKLKTAAEKSKTAADNVVAKE-KPAEEASPSPSGSGKKGKPKATQ----- 61

  Fly  1180 APAPALALAPDAQPIPVPDGVSVSKKTSESKPASNANVKSHKDKNISTAQKRP------TPARSV 1238
              .|.:|.|             :.|:.|.|:.|  .:||:......|.|:.:|      .||...
  Fly    62 --KPNVAKA-------------LQKEISSSEDA--LDVKNKPPAGFSGAKGKPHIMGQMDPAYRN 109

  Fly  1239 TCNNLSPIEAFELCKKLRSQPNS--FERASTLDKRAAWVRVSKELHATVTECRLGLQYALREMRN 1301
            ....|..: |.:|...:.|.|||  .|.||     ||...|.::..:|.::          :..:
  Fly   110 KIKKLMSL-AKQLPPNVFSLPNSQKEEGAS-----AAKSCVVEDDQSTDSD----------DAPD 158

  Fly  1302 LKIADPSNQCTMGHKYLHHMSEIYKQVKPNAQLTVRTPQQLNQLNESLAKNTQEVSPQ 1359
            |..|||                  |:.:|:.|         .||. ::|..|:|||.|
  Fly   159 LVEADP------------------KETQPDEQ---------GQLG-TVAVRTREVSKQ 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmrNP_572637.2 MADF_DNA_bdg 59..149 CDD:463144
GT1 213..295 CDD:474047
PHA03247 <474..864 CDD:223021
gNacalphaNP_608561.2 NAC_NACA 203..249 CDD:409233
UBA_NAC_euk 309..345 CDD:270541
Blue background indicates that the domain is not in the aligned region.

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