DRSC/TRiP Functional Genomics Resources

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Protein Alignment spri and rabgef1l

DIOPT Version :10

Sequence 1:NP_001259418.1 Gene:spri / 31987 FlyBaseID:FBgn0085443 Length:2043 Species:Drosophila melanogaster
Sequence 2:NP_957235.1 Gene:rabgef1l / 393915 ZFINID:ZDB-GENE-040426-813 Length:470 Species:Danio rerio


Alignment Length:377 Identity:82/377 - (21%)
Similarity:135/377 - (35%) Gaps:93/377 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1584 SKC---------RPALSEDDTIVEELQSTKDGSNGSCNQDTLKANRNGAGHHKLNNGNGNGKANN 1639
            |||         ...:.||..:.|.||..::.::.|.::        ||     .:...:.|.|:
Zfish    36 SKCWREENQCTRSKQIQEDRALAERLQREEEAAHASSSE--------GA-----RSQPASSKTNS 87

  Fly  1640 RPKVATIL----RNPSMRDREVLCHPRNKMSIQSSGPGDSLRAYT------LQLAQDPS------ 1688
            .|.|..:.    :.|..||......|.::.|.||..|.......|      |:..|.|.      
Zfish    88 VPMVKRLFTSAPKTPGRRDAGSSKTPVSQSSSQSRQPSAECDRITQHFIDFLKPFQRPGYDIFKQ 152

  Fly  1689 -STFARNI--ENFICCTKESREAAPQVVMRNMRQFMSGMKNYLVKHGEGKFHAELETARARLKSD 1750
             ..||.||  :..:.|         :.:..:::.|...|..||..:.:|              |.
Zfish   153 CHAFAENIAHKKVVGC---------EDLSDSVQDFYQSMSEYLQTNFKG--------------SP 194

  Fly  1751 EFLNLDAMLETVMHQL---VVLPLREHLYGIFVDHYQRSEDIQLLAQ---------NVRYACERE 1803
            |      ::||||.::   |:..|.|.|   |...:...|...|..|         ::...|   
Zfish   195 E------VVETVMEEVERYVMGRLYEQL---FCPDHTDDEKKDLTVQKRIRALHWVSIAMLC--- 247

  Fly  1804 AADFGIRPTVTPPSQAALRLIANLLWRLQEAELPLDKLELFLCVISTVFDATGCPRGQQLGADDF 1868
               ..:...:...|.:..|...:|: .|...::|.:||.........:..|....:.....||||
Zfish   248 ---VPLDEQIPKVSDSVERAKTDLI-NLDSKKVPKEKLACVTRCSKHILTAIQGSKKAAASADDF 308

  Fly  1869 LPVLVYVVAKCGFVGAEIEAEFMWGLLQPT-LLNGEPGYYLTALCSAVQVLK 1919
            ||.|||::.|..........:::.....|: |::||.|||.|.||.||..::
Zfish   309 LPALVYIILKANPPRLHSNIQYITRYCNPSRLMSGEDGYYFTNLCCAVSFIE 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spriNP_001259418.1 SH2 716..813 CDD:472789
VPS9 1824..1922 CDD:460489 28/97 (29%)
RA_Rin 1946..2030 CDD:340474
rabgef1lNP_957235.1 zf-A20 17..40 CDD:460313 3/3 (100%)
DUF5601 151..213 CDD:465668 17/90 (19%)
VPS9 261..363 CDD:460489 29/101 (29%)
Blue background indicates that the domain is not in the aligned region.

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