DRSC/TRiP Functional Genomics Resources

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Protein Alignment spri and Rinl

DIOPT Version :9

Sequence 1:NP_001259418.1 Gene:spri / 31987 FlyBaseID:FBgn0085443 Length:2043 Species:Drosophila melanogaster
Sequence 2:XP_006228715.1 Gene:Rinl / 292760 RGDID:1310133 Length:672 Species:Rattus norvegicus


Alignment Length:805 Identity:168/805 - (20%)
Similarity:261/805 - (32%) Gaps:263/805 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1200 RASLLTSFRPALDTVGGVMNRRPD---LL----------------------AETPSTPTPTQQSH 1239
            |.||:| |.|         :.|||   ||                      |.:|::...:.::.
  Rat    11 RGSLVT-FHP---------DCRPDRGPLLQSGSLKNDPLEREEGDFKCPSPASSPASLASSLENT 65

  Fly  1240 LTPCEEETTATPNESSSQSLLQFSGDVP--ARSRAGLLLPNLSGQVPPVAMTKSMTAAEDDGGDT 1302
            .|.|   .:.:|..||..|.......:|  .|.:.|.|:|.            ||..|:.|....
  Rat    66 FTSC---CSGSPRNSSCPSWSSLESCLPPCQRPKHGSLVPG------------SMRLAQPDMVSA 115

  Fly  1303 TPTAEGQ-----ANGASRSKQGSPFYAEPADALRQAGLTSAATAILRRQHRSQMLHASQRHSEPL 1362
            ..|.|.:     |.||.:|            .||   :.|...::||.|...::....:..:|..
  Rat   116 ATTEEARLSWPLAEGADKS------------PLR---VLSTTESLLRLQRTQRVWQVPELDAEHA 165

  Fly  1363 KAGFGGSGNGAMLQPSDLEKLAGSLDELKPKPKVSQQQQQSQQQQQPTKRARNRIDHWQL----- 1422
            ||                        .|||                           |.|     
  Rat   166 KA------------------------FLKP---------------------------WPLGSFLV 179

  Fly  1423 ---DSSWEFMAKQDTGSHAGGDYDTAAIDWQEKENSLGRDSRADGQGKKRTLTIHQIIANR-LPD 1483
               |.....|.|  ||. :.||.:|..|  |:....:..:|                 :|. :||
  Rat   180 IGQDPDQVLMLK--TGP-SSGDINTYQI--QKFPGGVSLES-----------------SNLCMPD 222

  Fly  1484 LNLPELVRCSTP-----PQTAALQPHVLGQDKAGVGCDGSQKSFQSQIGC-------RLSSYDNV 1536
              .|.|:...:.     |:|..|....:|        .|.:.|...::||       |:.|..|.
  Rat   223 --FPHLLAFLSASRDVLPRTLLLPTPTVG--------PGDKHSDPRRLGCIQVDTSGRVLSVVNQ 277

  Fly  1537 FCQNSFGGIDSAQSDDGTIFSEPWDSSQWDTFLPHDDATINSDTIHLSKCRPALSEDDTIVEELQ 1601
            ....:.||                    |:|..|............|:...|.......:.|.|:
  Rat   278 LYLETHGG--------------------WETETPQQTKPETGQKRSLAPRMPTPHRVSWVEESLK 322

  Fly  1602 STKDGSNGSCNQDTLKANRNGAGHHKLNNGNGNGKANNRPKV---ATIL------RNPSMRDREV 1657
            .....:....:....:.:..|...|.|.           |:|   :.:|      .|.|.:|.|.
  Rat   323 PEAHHTGQEVHHPERQVHYPGPEAHSLG-----------PEVHFPSPVLEEEEEVNNDSYKDEEE 376

  Fly  1658 LCHPRNKMSIQSSGPGDSLRAYTLQLAQDPSSTFARNIENFICCTKE---SREAAP-------QV 1712
            .|.             |.|.|:...||...||..||..:    |.:.   |....|       ..
  Rat   377 GCE-------------DMLTAHIRALASARSSYVARQYQ----CLRARLISDSGNPYSPGDPATE 424

  Fly  1713 VMRNMRQFMSGMKNYLVKHGEGKFHAELETARARLKSDEFLNLDAMLETVMHQLVVLPLREHLYG 1777
            :::::||.::.:::||.|  :....|........:..:|  :|...:|..:.:.|:.||:..|: 
  Rat   425 LLQDVRQLLTDLQDYLAK--DPDVRAVFGNRGPSIPREE--DLGPAVEVALCRAVLEPLKPALW- 484

  Fly  1778 IFVDHYQRSEDIQLLAQNVRYACEREAADFGIRPTVTPPSQA-ALR-LIANLLWRLQEAELPLDK 1840
                    ::...|.||.:|....|:.|   :|....|..|: ||| .|...|..|..|..|..|
  Rat   485 --------TKLRTLRAQELRRLRRRQIA---LRVGAGPEGQSPALRNRIHARLAHLHAACAPRRK 538

  Fly  1841 LELFLCVISTVF-DATGCPRGQQLGADDFLPVLVYVVAKCGFVG-AEIEAEFMWGLLQPTLLNGE 1903
            :.|.|.|.|.|: ...|....:.||||.|||.|...:.....:| .:::.||:..||.|..|.||
  Rat   539 VALLLAVCSDVYAGLAGGENKEPLGADAFLPALTEELIWSPHIGETQLDVEFLMELLDPGELRGE 603

  Fly  1904 PGYYLTALCSAVQVLKTFMASEGES 1928
            .|||||....|:..:..:....|.:
  Rat   604 AGYYLTTWFGALYHIAHYQPDAGRA 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spriNP_001259418.1 SH2 716..813 CDD:301589
VPS9 1821..1922 CDD:280383 37/103 (36%)
UBQ 1946..2026 CDD:294102
RinlXP_006228715.1 SH2 147..240 CDD:301589 27/167 (16%)
VPS9 521..623 CDD:280383 35/101 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343781
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23101
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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