DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spri and rin3

DIOPT Version :9

Sequence 1:NP_001259418.1 Gene:spri / 31987 FlyBaseID:FBgn0085443 Length:2043 Species:Drosophila melanogaster
Sequence 2:XP_002933252.2 Gene:rin3 / 100038102 XenbaseID:XB-GENE-488895 Length:1035 Species:Xenopus tropicalis


Alignment Length:1383 Identity:271/1383 - (19%)
Similarity:458/1383 - (33%) Gaps:429/1383 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   670 SSSEGGILAEGETSSEDDEEEPVEAEDEGEESSRDSSDNSPPCDLGLMERLLVTHPMWFLPGIQR 734
            |.:..|:.|....|...|..:|   |..|.|     ::...|..:.:::||:.|.|:|....:..
 Frog     4 SGTSAGMEAAARDSCPADVGDP---EKHGTE-----NNCHVPSGISVLDRLIKTCPVWLQLCMNP 60

  Fly   735 SGAVHLLQGKEEGTFIVRGSSQPNTMAVSVRLPQDTGPY-IEHYLIQSHDNVLSLESSRFTFGSI 798
            ..||.:|:.:..|.|::....:...|.:.|.:..:.... :..|.|:....::.||||...|..|
 Frog    61 EQAVDILKKEGPGVFLITRDVERKCMVLWVHVTSNKEQADVLRYNIKEEKTMMYLESSVLVFEDI 125

  Fly   799 PSLIAHYAQCCDELPVQLMLPRVLREANNRKKLSSLALLGQEFWSYVSSPALLGPLTPSVAPSKD 863
            ..|:|.|....|.||..|.||:.:..|...|:|.:.:.||..||.                    
 Frog   126 FKLVAFYCVSRDVLPFPLKLPQAIAAAQTYKELETFSNLGTGFWD-------------------- 170

  Fly   864 QQLLDAKSPLSLTETSGLGTATFFSDTVSKPPPTGAPPLPGGGLFSPTGSGQLLGFFSQAGTPSD 928
                     .:.|:.:.|..|.....|                   ..|..|.....|.....::
 Frog   171 ---------SAFTDGNKLAAAKQHRCT-------------------SNGDFQTCSVRSSHHIQNE 207

  Fly   929 TTNSSLSSFTTSGGQHMQLLSPNSVDSVILTMSPVDNPGHYLPGSTGAPMAPLCPSVVDQQLSTF 993
            ..|.:.....:.|...:..:||..::.....::              |...||...|.:.::.|.
 Frog   208 ANNCTCEIEISVGSGRLWFVSPIFIEECSNVLA--------------AEKLPLLNCVANSEIKTH 258

  Fly   994 KVAQTAPEVDQVRPQRPKPPNTLNLKPPAPPLRWSKPHSPDQNGSANGNFTVTTTVTFSMENGGG 1058
            |:..          :||.||      ||.||                                  
 Frog   259 KIVY----------RRPPPP------PPPPP---------------------------------- 273

  Fly  1059 GGSGPTVGNGNGKFVEVTTPAASNPFNALLNGQASTFQTFAKRLSPEGECKDTLSSQGSSSNDSR 1123
                               ||..||                                        
 Frog   274 -------------------PALKNP---------------------------------------- 279

  Fly  1124 WPPPARKLLTSPMTPLTPSGGSSSSGGKSRKSRAGKESQHYKESDILESPPMQYCASALSDKISD 1188
                       |:..:.|||...:.          |.|..|........||....|..||..:..
 Frog   280 -----------PLPSVPPSGPPPNY----------KRSHSYTSPQKSPRPPSFSVAPPLSCLLHS 323

  Fly  1189 YEDVWSHDPSDRASLLTSFRPALDTVGGVMNRRPDLLAETPSTPTPTQQSHLTPCEEETTATPNE 1253
            .    |:.|...:..|||..|.:.       :.|      ||:.||....  ||        |..
 Frog   324 S----SNQPMTPSLSLTSHAPCVP-------QNP------PSSNTPIVSQ--TP--------PLS 361

  Fly  1254 SSSQSLLQFSGDVPARSRAGLLLPNLSGQVPPVAMT---KSMTAAED--DGGDTTPTAEGQANGA 1313
            ..||:|.|.. |:|..|      .::..:|.|:|.:   ..:.:.||  |..:....:.|:.|  
 Frog   362 QMSQNLSQLK-DLPNTS------TDICVEVQPLAQSCEEMKINSTEDKKDSVEYAICSSGEQN-- 417

  Fly  1314 SRSKQGSPFYAEPADALRQAGLTSAATAILRRQHRSQMLHASQRHSEPLKAGFGGSGNGAMLQPS 1378
                              |....||.....|||        |.:.||       ..||       
 Frog   418 ------------------QKSAMSAPVVPKRRQ--------SGKISE-------NKGN------- 442

  Fly  1379 DLEKLAGSLDELKPKPKVSQQQQQSQQQQQPTKR--ARNRIDHWQLDSSWEFMAKQDTGSHAGGD 1441
                      .::.|..:.|.::||.|..:...:  |...::|..:     .:.|:|        
 Frog   443 ----------SVRKKELLQQTERQSTQSVKSVSKDQAETHLNHETI-----MLIKKD-------- 484

  Fly  1442 YDTAAIDWQEKE-NSLGRDSRADGQGKKRTLTIHQIIANRLPDLNLPELVRCSTPPQTAALQPHV 1505
                 |:..|:: .|.|:.::.......||......:|..||..|....|:        .|:...
 Frog   485 -----IETLEQQCISQGKRNKTPPVPPPRTKKFSHRVAPALPGQNSHSPVK--------ELRSRT 536

  Fly  1506 LGQDKAGVGCDGSQKSFQSQIGCRLSSYDNVFCQNSFGGIDSAQSDDGTIFSEPWDSSQWDTFLP 1570
            ...|......|..|....||..|  |.|.: |.:|                .||.      |.||
 Frog   537 QSSDYKAKCSDVKQNGRTSQSDC--SKYKD-FAKN----------------KEPC------TRLP 576

  Fly  1571 HD-----DATINSDTIHLSKCRPALS-EDDTIVEELQSTKDGSNGSCNQDTLKANRNGAGHHKLN 1629
            ..     |.:::|....|:  .|..| |.|::          |..|..:|        ..|.|::
 Frog   577 TKELKSLDTSLSSPASGLT--IPVTSPEQDSL----------STSSAEED--------HDHEKVS 621

  Fly  1630 NGNGNGKANNRPKVATILRNPSMRDRE--VLCHPRNKMSIQS--------SGPGDSLRAYTLQLA 1684
                               :||:|...  :|...:|::||.:        ......|:....:||
 Frog   622 -------------------SPSIRKTHSFMLDRAKNRLSIVTITNVFSAFMSAERKLQKKITELA 667

  Fly  1685 QDPSSTFARNIENFICCTKE--SREAAPQVVMRNMRQFMSGMKNYLVKHGEGKFHAELETARARL 1747
            ||..:.|...::::...:.:  :::::...:::.:|..|:.:|:|||:..|.|...|..|    :
 Frog   668 QDKETYFGNLVQDYKAYSLDMMAKQSSSTEMLQEIRLMMTQLKSYLVQSAELKTMIESTT----V 728

  Fly  1748 KSDEFLNLDAMLETVMHQLVVLPLREHLYGIFVDHYQRSEDIQLLAQNVRYACEREAADFGIRPT 1812
            .:|:  .::|::|..:.:.|:.||:..:.|...:.:.:...::||.:|.....:....|.|:  |
 Frog   729 YTDD--RIEAIVEAALCKCVLKPLKSPIEGYLREIHTKDGSLRLLKENQIVIQDITTTDLGV--T 789

  Fly  1813 VTPPSQAALRLIANLLWRLQEAELPLDKLELFLCVISTVFD--ATGCPRGQQLGADDFLPVLVYV 1875
            .:.|..:.:..|......:.:...|..|:...|.....::|  |||.| |:..|||||||||:||
 Frog   790 TSVPEISVMEKITQKFSVMHKTYSPEKKVSYLLKACKMIYDSMATGSP-GKLHGADDFLPVLMYV 853

  Fly  1876 VAKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSAVQVLKTF--------MASEGESGSGS 1932
            :|:|.......:.|:|..|:.|.|..||..||||....|::.:|.:        ::.|.:.....
 Frog   854 LARCDLTELLQDVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYDKITVTRQLSVEVQDSIHR 918

  Fly  1933 LDWRSSCLPACSSVLRVIIPDECNGSLQ-----TRTLPVRPHTTTREVCRIIAHKARITNPQDYA 1992
            .:.|.:...|  .|.|..|.|....|.:     :|||.::|.|....:.:..|.|.::..||:|.
 Frog   919 WERRRTLNKA--RVSRSSIQDFITISFEELDSKSRTLVIKPDTNVELLLQDCAEKFQVLEPQNYG 981

  Fly  1993 LFKLVDGEETLLTDAECP 2010
            |:..|:.....|.|...|
 Frog   982 LYVQVNERSLRLADDALP 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spriNP_001259418.1 SH2 716..813 CDD:301589 24/97 (25%)
VPS9 1821..1922 CDD:280383 36/110 (33%)
UBQ 1946..2026 CDD:294102 20/70 (29%)
rin3XP_002933252.2 SH2_RIN3 42..142 CDD:198258 26/99 (26%)
VPS9 798..901 CDD:366977 36/103 (35%)
RA_Rin3 936..1023 CDD:340547 17/64 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8786
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001291
OrthoInspector 1 1.000 - - otm49188
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2330
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.000

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