DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spri and rin2a

DIOPT Version :9

Sequence 1:NP_001259418.1 Gene:spri / 31987 FlyBaseID:FBgn0085443 Length:2043 Species:Drosophila melanogaster
Sequence 2:XP_001345314.1 Gene:rin2a / 100006622 ZFINID:ZDB-GENE-090312-194 Length:938 Species:Danio rerio


Alignment Length:1413 Identity:285/1413 - (20%)
Similarity:427/1413 - (30%) Gaps:605/1413 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   660 ELSQSRTSLVSSSEGGIL--AEGETSSEDDEEEPVEAEDEGEESSRDSSDNSPPCDLGLMERLLV 722
            ||.|.........|..||  .|||.|....:....    .|....|||..:|....:.:::||:.
Zfish    31 ELKQEMVQPAREPETEILQGLEGEVSGLFLQSSAC----AGVPGVRDSGYDSLRRRMSMLDRLMQ 91

  Fly   723 THPMWFLPGIQRSGAVHLLQGKEEGTFIVRGSSQPNTMAVSVRLPQDTGPYIEHYLIQSHDNVLS 787
            ||.:|.|..:....|.|:||.:..|:|:||...:.....:|:|:..|| ..:..:.::......|
Zfish    92 THSVWLLLSLSDDEARHILQPQPAGSFVVRRCYKLQKKVISLRMDSDT-LIVRDFPVKESQYTFS 155

  Fly   788 LESSRFTFGSIPSLIAHYAQCC---DELPVQLMLPRVLREANNRKKLSSLALLGQEFW------- 842
            ||.|..:|..:..|:|.   ||   |.||..|.||..:..|.....|..:|.||:.||       
Zfish   156 LEGSGISFADLFRLVAF---CCISRDVLPFTLKLPEAIASAKTPTDLEEVAKLGKGFWDSELCNK 217

  Fly   843 --SYVS--------------SPALLGPLTPS-VAPSKDQQLLDAKSPLSLTETSGLGTATFFSDT 890
              |.||              |||:....||| :..|:....|...:||            |....
Zfish   218 NKSSVSGETACDGSKQRLKRSPAVPFTRTPSELECSQSNGALCFINPL------------FLQTH 270

  Fly   891 VSKPPPTGAPPLPG--GGLFSPTGSGQLLGFFSQAGTPSDTTNSSLSSFTTSGGQHMQLLSPNSV 953
            .|.|.|....|.||  ||                                  |.||         
Zfish   271 QSNPSPKKQEPSPGDEGG----------------------------------GSQH--------- 292

  Fly   954 DSVILTMSPVDNPGHYLPGSTGAPMAPLCPSVVDQQ--LSTF-KVAQTAPEVDQVRPQRPKPPNT 1015
                         .|.....||           .||  .|.| :...:.|.:...|.:..:.|  
Zfish   293 -------------HHRALHRTG-----------QQQGDSSVFCRKTPSKPHISVSRSESERSP-- 331

  Fly  1016 LNLKPPAPPLRWSKPHSPDQNGSANG-----NFTVTTTVTFSMENGGGGGSGPTVGNGNGKFVEV 1075
                ||.||        |.:.||:..     ..|:..||.:                       :
Zfish   332 ----PPRPP--------PPRFGSSRSAVLRKQKTMPETVCW-----------------------I 361

  Fly  1076 TTPAASNPFNALLNGQASTFQTFAKRLSPEGECKDTLSSQGSSSNDSRWPPPARKLLTSPMTPLT 1140
            .||...   .:||....|:|.:    |||            |||      ||  |..:.|:  |.
Zfish   362 KTPQEK---TSLLGRLGSSFIS----LSP------------SSS------PP--KKFSKPI--LV 397

  Fly  1141 PSGGSSSSGGKSRKSRAGKESQHYKESDILESPPMQYCASALSDKISDYEDVWSHDPSDRASLLT 1205
            ||..:.:|.|                  :|::..:: |..||.|:..:....||           
Zfish   398 PSARNKNSSG------------------LLDADGIR-CHMALDDQTIEDAVSWS----------- 432

  Fly  1206 SFRPALDTVGGVMNRRPDLLAETPSTPTPTQQSHLTPCEEETTATPNE--------SSSQSLLQF 1262
                               ||:. |:..||...:.:|..|. .:|..|        :||...|.|
Zfish   433 -------------------LAKL-SSRNPTAMENGSPAHEH-CSTGRERLSDISISTSSSDSLDF 476

  Fly  1263 SGDVPARSRAGLLLPNLSGQVPPVAMTKSMTAAEDDGGDTTPTAEGQANGASRSKQGSPFYAEPA 1327
            |...|....|.   |:.:.:  |.. ..|....||||          .|..|..:..|||.::..
Zfish   477 SHSFPLPMEAS---PSKTDR--PTG-DSSQEEEEDDG----------INLESDQEVPSPFKSKKQ 525

  Fly  1328 DALRQAGLTSAATAILRRQHRSQMLHASQRHSEPLKAGFGGSGNGAMLQPSDLEKLAGSLDELKP 1392
            :        ||.|.:|.|..|.|                             |.|::..|:.|  
Zfish   526 N--------SAGTFVLPRALRGQ-----------------------------LRKMSDVLNSL-- 551

  Fly  1393 KPKVSQQQQQSQQQQQPTKRARNRIDHWQLDSSWEFMAKQDTGSHAGGDYDTAAIDWQEKENSLG 1457
                          ..|.:||..:|    ::.|      :|.|::                    
Zfish   552 --------------MTPERRAIRKI----VEQS------RDKGTY-------------------- 572

  Fly  1458 RDSRADGQGKKRTLTIHQIIANRLPDLNLPELVRCSTPPQTAALQPHVLGQDKAGVGCDGSQKSF 1522
                                                                             
Zfish   573 ----------------------------------------------------------------- 572

  Fly  1523 QSQIGCRLSSYDNVFCQNSFGGIDSAQSDDGTIFSEPWDSSQWDTFLPHDDATINSDTIHLSKCR 1587
               .||.:..|                                                      
Zfish   573 ---FGCLVQDY------------------------------------------------------ 580

  Fly  1588 PALSEDDTIVEELQSTKDGSNGSCNQDTLKANRNGAGHHKLNNGNGNGKANNRPKVATILRNPSM 1652
                     |..||.                          |.|                     
Zfish   581 ---------VSFLQE--------------------------NRG--------------------- 589

  Fly  1653 RDREVLCHPRNKMSIQSSGPGDSLRAYTLQLAQDPSSTFARNIENFICCTKESREAAPQVVMRNM 1717
                  ||        :||         |:|.|                              .:
Zfish   590 ------CH--------TSG---------LELLQ------------------------------TL 601

  Fly  1718 RQFMSGMKNYLVKHGEGKFHAELETARARLKSDEFLNLDAMLETVMHQLVVLPLREHLYGIFVDH 1782
            ||||:.||:||::      .:||:.....|..::  .:|.::|..||:.|:.||:..:.....|.
Zfish   602 RQFMTQMKSYLLQ------SSELDPPIESLIPED--QIDQVMEKAMHKCVLKPLKPVIEAALRDF 658

  Fly  1783 YQRSEDIQLLAQNVRYACEREAADFGIRPTVTPPSQAALRLIANLLWRLQEAELPLDKLELFLCV 1847
            ...|..:|.|.:|:..|..::..:.|: ....||...|:..|.:....:.:...|..|:.|.|.|
Zfish   659 QLSSGTMQQLKENLLLAKAKQPQEMGV-DGARPPDPVAIEKIRHKFNNMCKMYSPEKKVSLLLSV 722

  Fly  1848 ISTVFDATGCPRGQQLGADDFLPVLVYVVAKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALC 1912
            ...::.......|:..|||||||:|.||:|:|.....:.|.::|..||.|:||:||.|||||:..
Zfish   723 CKLIYTIMENNSGRMYGADDFLPMLTYVMAQCDMPELDTEIQYMMELLDPSLLHGEGGYYLTSAY 787

  Fly  1913 SAVQVLKTFMASE------GESGSGSLDW--RSSCLPACSSV------LRVIIPDECNGSLQTRT 1963
            .|:.::|.|...:      .|:.:....|  |.:......||      |||.:.|..:| ...:|
Zfish   788 GAMSLIKNFQEDQAARELSSETRNTLHQWHRRRTTQRTTPSVDDFQNYLRVALQDASSG-CTAKT 851

  Fly  1964 LPVRPHTTTREVCRIIAHKARITNPQDYALFKLVDGEETLLTDAECPQ 2011
            |.|:|:.||.:||:|.|.|.:|::|::||||.|.:.....||....||
Zfish   852 LQVQPYATTEDVCQICADKFKISDPENYALFLLTEETTQQLTLDTHPQ 899

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spriNP_001259418.1 SH2 716..813 CDD:301589 28/99 (28%)
VPS9 1821..1922 CDD:280383 35/100 (35%)
UBQ 1946..2026 CDD:294102 28/72 (39%)
rin2aXP_001345314.1 SH2 85..183 CDD:301589 30/101 (30%)
VPS9 693..810 CDD:128469 38/116 (33%)
Rin1_RA 835..921 CDD:176371 27/66 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170584030
Domainoid 1 1.000 77 1.000 Domainoid score I8754
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 248 1.000 Inparanoid score I3238
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001291
OrthoInspector 1 1.000 - - otm25568
orthoMCL 1 0.900 - - OOG6_107356
Panther 1 1.100 - - O PTHR23101
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3144
SonicParanoid 1 1.000 - - X2330
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.920

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