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Protein Alignment CG32687 and Sur-8

DIOPT Version :9

Sequence 1:	NP_001259412.1	Gene:	CG32687 / 31980	FlyBaseID:	FBgn0052687	Length:	377	Species:	Drosophila melanogaster
Sequence 2:	NP_001262665.1	Gene:	Sur-8 / 42093	FlyBaseID:	FBgn0038504	Length:	694	Species:	Drosophila melanogaster

Alignment Length:	433	Identity:	109/433 - (25%)
Similarity:	176/433 - (40%)	Gaps:	102/433 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 MSLDLVTLEDH----LASPQKALLKSSGDIETMLLNHNRLVGLPRLLLQFGNLKILDLSSNAITT 84
            ::|.:::|.::    |.|...||:    ::.|:.::||.|..||..:....||..|||..|.:..
  Fly   275 VNLTMLSLRENKIRELGSAIGALV----NLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLD 335

  Fly    85 LPDAVCQL-PLVTLIAKNNLLTNASLPKSLLTKMA----NGNGNG-------------------- 124
            :||::..| .||.|..:.|.|  :|:|.:|....:    |..|||
  Fly   336 IPDSIGNLKSLVRLGMRYNRL--SSVPATLKNCKSMDEFNVEGNGITQLPDGMLASLSGLTTITL 398

  Fly   125 -------NATGG----TN----------------------STLKELNLSGNQLTHFPEQVTELRH 156
                   ..|||    ||                      ..|.:||:..|.||..|..:....:
  Fly   399 SRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENMLTALPLDIGTWVN 463

  Fly   157 LKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSLNQLQALVLCDNLIEILPTSIA 221
            :..|.|..|.:..:..||..:|:|.:|.|..|::.::|..:|:|.:|:.|.|.:|.||:||..|.
  Fly   464 MVELNLATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHEIG 528

  Fly   222 RLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASG 286
            .|..|:.|:|..|::..||:.|..|.|||.||:.:|.|  :|:      |..:..|.........
  Fly   529 LLHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNL--QFL------PEEIGSLESLENLYIN 585

  Fly   287 QRPGPYDIPRTLA-----EYLNSANCCVN----------PNCKGVFFDNRVEHIKFVDFCGKYRV 336
            |.||...:|..||     :|||...|.::          |:....:......:.:..|..|.:|.
  Fly   586 QNPGLEKLPFELALCQNLKYLNIDKCPLSTIPPEIQAGGPSLVLQWLKMHSPYRQMXDVDGVWRT 650

  Fly   337 PLLQYLCSSKCIEP-------EQPAARGSSVPAASASSGFMMR 372
            ..:    .|.|...       :.|.|.|:....|:|:.|...|
  Fly   651 VYV----GSDCYYQYELQTVNQAPGAGGNGGGGAAAAGGSASR 689

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.