DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32687 and Lrrc39

DIOPT Version :9

Sequence 1:NP_001259412.1 Gene:CG32687 / 31980 FlyBaseID:FBgn0052687 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001366558.1 Gene:Lrrc39 / 109245 MGIID:1924557 Length:355 Species:Mus musculus


Alignment Length:261 Identity:73/261 - (27%)
Similarity:136/261 - (52%) Gaps:22/261 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEVYTSDSSDTDSREQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIETMLLNHNRLVGLPRL 65
            :.::....|.|..:|:.|.:.||:.| .:..|:....| .:|||.: .::...|:...|:.:|..
Mouse    40 VRIWEDRVSLTKLKEKVTREDGRVIL-RIEKEEWKTLP-SSLLKLN-QLQEWQLHRTGLLKIPEF 101

  Fly    66 LLQFGNLKILDLSSNAITTLPDAVCQLP-LVTLIAKNNLLTNASLPKSLLTKMANGNGNGNATGG 129
            :.:|.:|.:||||.|.|:.:|..:..|. |..||...|.:  .::||.|          .|.|  
Mouse   102 IGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNKI--KTVPKEL----------SNCT-- 152

  Fly   130 TNSTLKELNLSGNQ-LTHFPEQVTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEV 193
               :|::|.|:.|: ::..|.::::|..|.:|.|..|:.:::...:..|.:|..|.:|.|.:.::
Mouse   153 ---SLEKLELAVNRDISDLPPELSKLLKLTHLDLSMNQFTTIPHAVLDMPALEWLDMGSNSLQQL 214

  Fly   194 PEAVGSLNQLQALVLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNP 258
            |:::..:..|..|.|..|.|..||.:|..:|||.:|:|..|:|:.:|..:..:.||..::.||||
Mouse   215 PDSLDRMRSLHTLWLQRNEITCLPETIKNMKNLGTLVLSNNKLQDIPGCMEEMTNLRFVNFRDNP 279

  Fly   259 L 259
            |
Mouse   280 L 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32687NP_001259412.1 leucine-rich repeat 72..92 CDD:275380 8/19 (42%)
leucine-rich repeat 94..133 CDD:275380 9/38 (24%)
LRR_8 132..190 CDD:290566 15/58 (26%)
LRR_4 134..171 CDD:289563 10/37 (27%)
leucine-rich repeat 134..156 CDD:275380 6/22 (27%)
leucine-rich repeat 157..179 CDD:275380 5/21 (24%)
leucine-rich repeat 180..202 CDD:275380 5/21 (24%)
LRR_8 202..259 CDD:290566 21/56 (38%)
leucine-rich repeat 203..225 CDD:275380 8/21 (38%)
leucine-rich repeat 226..248 CDD:275380 6/21 (29%)
Lrrc39NP_001366558.1 LRR 19..>286 CDD:227223 73/261 (28%)
LRR 1 84..105 3/20 (15%)
leucine-rich repeat 85..107 CDD:275380 4/21 (19%)
LRR 2 107..128 8/20 (40%)
leucine-rich repeat 108..127 CDD:275380 8/18 (44%)
LRR 3 130..152 8/33 (24%)
leucine-rich repeat 131..153 CDD:275380 9/38 (24%)
LRR 4 153..176 5/22 (23%)
leucine-rich repeat 154..177 CDD:275380 6/22 (27%)
LRR 5 177..198 4/20 (20%)
leucine-rich repeat 178..200 CDD:275380 5/21 (24%)
LRR 6 200..221 5/20 (25%)
leucine-rich repeat 201..223 CDD:275380 5/21 (24%)
LRR 7 223..244 8/20 (40%)
leucine-rich repeat 224..246 CDD:275380 8/21 (38%)
LRR 8 246..267 7/20 (35%)
leucine-rich repeat 247..269 CDD:275380 6/21 (29%)
LRR 9 269..290 7/12 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.