DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32687 and lrrc58

DIOPT Version :9

Sequence 1:NP_001259412.1 Gene:CG32687 / 31980 FlyBaseID:FBgn0052687 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001165009.1 Gene:lrrc58 / 100328949 XenbaseID:XB-GENE-963289 Length:349 Species:Xenopus tropicalis


Alignment Length:370 Identity:161/370 - (43%)
Similarity:220/370 - (59%) Gaps:30/370 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 TDSREQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIETMLLNHNRLVGLPRLLLQFGNLKIL 75
            ||.  ...|:...:.|:.:.||  |.|..|     ..|::.:||.|||||.||..:..|.:|.:|
 Frog     7 TDG--DNVLNLTHLGLENLNLE--LVSENK-----RKDVQQLLLPHNRLVVLPPHVNSFTHLHLL 62

  Fly    76 DLSSNAITTLPDAVCQL-PLVTLIAKNNLLTNASLPKSLLTKMANGNGNGNATGGTNSTLKELNL 139
            |:|:|.:..:.:.:..| .|.||:||||.|...|.||.|              ||..  |:.|||
 Frog    63 DISNNNMAYIGEEILGLTKLKTLLAKNNRLDEFSFPKEL--------------GGLR--LEVLNL 111

  Fly   140 SGNQLTHFPEQVTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSLNQLQ 204
            |||:....|:|..:::.||.|.||||::.|:..:|..:.||..|.||||.||.:|..:.:|..|.
 Frog   112 SGNRFEEIPDQFLQIQTLKSLSLGGNRLKSIPAEIENLISLEFLYLGGNFISSIPPELANLPYLS 176

  Fly   205 ALVLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNPLVVRFVQDMAL 269
            .||||||.|:.:|..:|::.:|:||.|| |.|.:||::|::|..|.|||||.||||||||:|:..
 Frog   177 YLVLCDNRIQSVPPQLAQVHSLRSLSLH-NLLTYLPREILSLVQLQELSLRGNPLVVRFVRDLTY 240

  Fly   270 KPPTLLELAGRMVKASGQRPGPYDIPRTLAEYLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKY 334
            .||||||||||.||:.|....|.::|..|..||:.|:.|.||.|.||:||..|..||||||||||
 Frog   241 TPPTLLELAGRTVKSRGIPYCPQELPENLLMYLDLASKCPNPKCGGVYFDCCVRQIKFVDFCGKY 305

  Fly   335 RVPLLQYLCSSKCIEP--EQPAARGSSVPAASASSGFMMRKVLLG 377
            |:||:.||||.:|..|  ....:...|...|:|::. .|:|||||
 Frog   306 RLPLMHYLCSPECSSPCGSTSQSESDSEDEANAAAR-RMQKVLLG 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32687NP_001259412.1 leucine-rich repeat 72..92 CDD:275380 5/19 (26%)
leucine-rich repeat 94..133 CDD:275380 14/38 (37%)
LRR_8 132..190 CDD:290566 25/57 (44%)
LRR_4 134..171 CDD:289563 17/36 (47%)
leucine-rich repeat 134..156 CDD:275380 9/21 (43%)
leucine-rich repeat 157..179 CDD:275380 9/21 (43%)
leucine-rich repeat 180..202 CDD:275380 10/21 (48%)
LRR_8 202..259 CDD:290566 28/56 (50%)
leucine-rich repeat 203..225 CDD:275380 10/21 (48%)
leucine-rich repeat 226..248 CDD:275380 11/21 (52%)
lrrc58NP_001165009.1 LRR 1 14..34 6/26 (23%)
LRR <33..>230 CDD:227223 88/213 (41%)
LRR 2 35..56 10/20 (50%)
leucine-rich repeat 37..58 CDD:275380 10/20 (50%)
LRR 3 58..80 5/21 (24%)
leucine-rich repeat 59..74 CDD:275380 5/14 (36%)
LRR 4 81..102 12/34 (35%)
LRR 5 105..125 9/21 (43%)
leucine-rich repeat 106..128 CDD:275380 9/21 (43%)
LRR 6 128..149 9/20 (45%)
leucine-rich repeat 129..151 CDD:275380 9/21 (43%)
LRR 7 151..173 10/21 (48%)
leucine-rich repeat 152..174 CDD:275380 10/21 (48%)
LRR 8 174..195 10/20 (50%)
leucine-rich repeat 175..197 CDD:275380 10/21 (48%)
LRR 9 197..217 10/20 (50%)
leucine-rich repeat 198..219 CDD:275380 11/21 (52%)
LRR 10 219..239 15/19 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 117 1.000 Domainoid score I5842
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H14598
Inparanoid 1 1.050 264 1.000 Inparanoid score I2987
OMA 1 1.010 - - QHG52401
OrthoDB 1 1.010 - - D382000at33208
OrthoFinder 1 1.000 - - FOG0005500
OrthoInspector 1 1.000 - - otm48113
Panther 1 1.100 - - LDO PTHR45752
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4305
SonicParanoid 1 1.000 - - X3919
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

Return to query results.
Submit another query.