DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32687 and lrrc39

DIOPT Version :9

Sequence 1:NP_001259412.1 Gene:CG32687 / 31980 FlyBaseID:FBgn0052687 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001123736.1 Gene:lrrc39 / 100170481 XenbaseID:XB-GENE-984701 Length:322 Species:Xenopus tropicalis


Alignment Length:248 Identity:72/248 - (29%)
Similarity:128/248 - (51%) Gaps:22/248 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 REQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIETMLLNHNRLVGLPRLLLQFGNLKILDLS 78
            :|:.:.:.||:.|.:...|.....|  .|:|.. .::...::...|..:|..::.|.||.:||||
 Frog    57 KEKVSNEDGRLILRIEKEEWKTLPP--CLVKIP-QLQEWQIHRTGLTAIPTCIVYFTNLLVLDLS 118

  Fly    79 SNAITTLPDAVCQLP-LVTLIAKNNLLTNASLPKSLLTKMANGNGNGNATGGTNSTLKELNLSGN 142
            .|:||.:|..:..|. |..|:...|.:  :.:|..|               .|..:|::|:||.|
 Frog   119 RNSITKIPREIGTLTNLRELLLSYNRI--SEVPAEL---------------STCESLEKLDLSVN 166

  Fly   143 Q-LTHFPEQVTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSLNQLQAL 206
            : ::..|.|:..|..|.:|.|..|:.:|:.:.:.::.:|..|.:|.|.:.|:|:.:..:..|..|
 Frog   167 RDISDLPSQLISLARLVHLDLSMNQFASIPRTVVELPALEWLDMGSNRLKELPQDIDRMQHLHTL 231

  Fly   207 VLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLTELSLRDNPL 259
            .|..|.|..||.||..::||.:|:|..|:||.:||.:.:|.:|..::.|||||
 Frog   232 WLQRNEISHLPDSIGSMRNLSTLVLCNNQLRGIPKCLQSLSSLWFVNFRDNPL 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32687NP_001259412.1 leucine-rich repeat 72..92 CDD:275380 9/19 (47%)
leucine-rich repeat 94..133 CDD:275380 6/38 (16%)
LRR_8 132..190 CDD:290566 17/58 (29%)
LRR_4 134..171 CDD:289563 13/37 (35%)
leucine-rich repeat 134..156 CDD:275380 8/22 (36%)
leucine-rich repeat 157..179 CDD:275380 5/21 (24%)
leucine-rich repeat 180..202 CDD:275380 6/21 (29%)
LRR_8 202..259 CDD:290566 23/56 (41%)
leucine-rich repeat 203..225 CDD:275380 9/21 (43%)
leucine-rich repeat 226..248 CDD:275380 9/21 (43%)
lrrc39NP_001123736.1 LRR_8 87..145 CDD:290566 17/58 (29%)
leucine-rich repeat 89..111 CDD:275380 3/21 (14%)
LRR_RI <110..>275 CDD:238064 55/181 (30%)
leucine-rich repeat 112..134 CDD:275380 10/21 (48%)
LRR_8 133..192 CDD:290566 18/75 (24%)
leucine-rich repeat 135..157 CDD:275380 6/38 (16%)
leucine-rich repeat 158..181 CDD:275380 8/22 (36%)
leucine-rich repeat 182..204 CDD:275380 5/21 (24%)
leucine-rich repeat 205..227 CDD:275380 6/21 (29%)
LRR_8 227..284 CDD:290566 23/56 (41%)
leucine-rich repeat 228..250 CDD:275380 9/21 (43%)
leucine-rich repeat 251..273 CDD:275380 9/21 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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