DRSC/TRiP Functional Genomics Resources

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Protein Alignment nocte and Prrc2b

DIOPT Version :9

Sequence 1:NP_001245614.1 Gene:nocte / 31976 FlyBaseID:FBgn0261710 Length:2309 Species:Drosophila melanogaster
Sequence 2:XP_006234067.1 Gene:Prrc2b / 296637 RGDID:1595906 Length:2240 Species:Rattus norvegicus


Alignment Length:2761 Identity:544/2761 - (19%)
Similarity:827/2761 - (29%) Gaps:1053/2761 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LGGSRGERNAKPKFTALDINRMYKNSRGESSEPSAQKNQVPRKHGMQILGKVPSARR--PPANLP 66
            ||.....::.|.|::.|.:...||.    .|..:.:.:.:|| ||:|.||||.:|||  ||||||
  Rat     5 LGQITQGKDGKSKYSTLSLFDKYKG----RSVGAVRSSVIPR-HGLQSLGKVATARRMPPPANLP 64

  Fly    67 SLKAETHTSSNNNLLVSVEGATSGGAGAGGAAGSGAAGTNTSHNNTTAHSGSSGTSGGAGSGGGG 131
            |||:|...:..|.::|..:                  ||..::........||..          
  Rat    65 SLKSENKGNDPNIVIVPKD------------------GTGWANKQDQQDPKSSSV---------- 101

  Fly   132 TASSSAGGHLSQQLTHSQHQHNNNVALGPNAGKFVNSNNGSSNNNAGSSGSGNKNFKLINNSVGS 196
            |||         ||..||.|        |...|.|:                  |.:....|:..
  Rat   102 TAS---------QLPESQPQ--------PGLQKSVS------------------NLQKPTQSISQ 131

  Fly   197 SGGGGQGGSGGGGSSGVGGGSGSGSGGHSVNSPKTWSAIT---TGHERGSGGQNYGRQQQQVVPH 258
            .           .:|.|.||            ||:|:.::   .|||.|..|.:      :::..
  Rat   132 E-----------NTSSVPGG------------PKSWAQLSGKPVGHEGGLRGSS------RLLSF 167

  Fly   259 YQSPQFQYEFPTLDGTVGSGAGGGSGAGVGSGSGAGKSHYQNQVHHAGHQNHHQHQQHHQQHQQH 323
              ||:   |||||     ..|||...||...|:                                
  Rat   168 --SPE---EFPTL-----KAAGGQDKAGKEKGA-------------------------------- 190

  Fly   324 HHQQQQHHRDYHHGHGRQYGHHSHRDYRDGSDDVGGGSADLGELSLRPQNDTAAWLQQQEKAAKV 388
                    .|..:|.|.                           |||||| .::|.:        
  Rat   191 --------LDLSYGPGP---------------------------SLRPQN-VSSWRE-------- 211

  Fly   389 AAAAAADQGLNLQGPGHHQMGGNGGAGGGSGGAVPLPILSLMPSFMRSGAPMPASGATAASILAG 453
                                       ||....:....||..|:.:.|.......|| ::|....
  Rat   212 ---------------------------GGGRNIISAVSLSASPTELGSRNSSGGDGA-SSSACTS 248

  Fly   454 GSLDTSALPNAPYQNGILGARSASPAVVGSGSFRAATAIPKRPPT------------SSSPPQSG 506
            .|.|.|..|             |.|:..|:..|....   .:|||            .||..|:.
  Rat   249 DSKDPSLRP-------------AQPSRKGASQFMGHV---YQPPTYHDMLPAFMCSPQSSENQNT 297

  Fly   507 LGIGGSPTP--------PQSQQQANGGAGGAGRKDKDYVVEPEVAQMQRP------------IIR 551
            :.....|.|        |..|.|.|         |:|....|.||:..||            ||.
  Rat   298 VERSSFPLPQLRLEPRVPFRQFQMN---------DQDGKERPGVARPVRPLRQLVERAPRPTIIN 353

  Fly   552 EEDLERLNAI--AKDDSWT-KQDDIDFTKKLAFSDDESTPEE---HQGQGKQHS----SAQLQAQ 606
            .|:|:.|:.:  ..||.|. ..:::|:::||.|||||.  ||   ..|:.|.::    ..:..:.
  Rat   354 AENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDED--EEDVVKDGRSKWNNWDPRRQRALSL 416

  Fly   607 GSSSSTDQRKL--------------------------SASTTSWQRGKESTDRDQPSEGIQDQQQ 645
            .|:.|||.::.                          |....||..|   .|..:|:.|...:.|
  Rat   417 SSADSTDAKRTQEEGKDWSGTAGVSRVVRKVPEPQPPSRKLHSWASG---PDYQKPTMGSMFRPQ 478

  Fly   646 QLQQQQQQQEVRQQNGHRGSSGNVGAPVAGGIALDASVYERVKQRKEEEERREMERKQAA-AKKL 709
            .::.::.:...||:......|..|               ||.::|:||||||..|.:.|| |.||
  Rat   479 SIEDKEDKPPPRQKFIQSEMSEAV---------------ERARKRREEEERRAREERLAACAAKL 528

  Fly   710 QELEMKMNSKKAAAAALAGAEGGVSSASVPLSNEVPPTSAPLGNASEDEGGGQGGGGG------- 767
            ::|:.|....:.|           |....|:..|| |.|..:...|..|.|.....|.       
  Rat   529 KQLDQKCRQAQKA-----------SETPKPVEKEV-PRSPGIEKLSPPENGPVVRKGSPEFPVQE 581

  Fly   768 -----LNRRPRGSISSLGSGVTPTGGAGGGGGGVSSSS-----SAGGDYGQKNFLTHFQSNLPPR 822
                 |...|         ..:||..........||||     ...|...|:  .:.:|.:||||
  Rat   582 APTMFLEETP---------ATSPTVAQSNNSSSSSSSSIEEEVREAGSPAQE--FSKYQKSLPPR 635

  Fly   823 FQRQQQQQQQQLPRLEKSASASSAFDSNSRY---------------------------------- 853
            |||||||||||..:.::.............|                                  
  Rat   636 FQRQQQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWM 700

  Fly   854 -----------------------LQKGGV--------SGGGGGVSG------------------- 868
                                   |...|:        |..|.|...                   
  Rat   701 MMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCRSEDQNCVPSLQERKVTAIDP 765

  Fly   869 -------GAQANAGQGRSIS----------GGYVQRG----ASVGGSSGYGRNRH---------- 902
                   |..|...:|.|:|          |.:|:..    ||.|.|.|....|.          
  Rat   766 APVWSPEGYMALQNKGYSLSHPKSADTLAMGMHVRNERSYCASPGRSGGISAQRDLFEERGEEFL 830

  Fly   903 ---------DSSSAREDQDLDQQRFTRGQDYRQAQALPRSISENSHRKTSVSSAGDDVLGG---- 954
                     |..|....|.:.|:.....|:..|....|...:.|    ...|....|.:..    
  Rat   831 SAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGCTPN----LRCSPLEPDFVPAEKKP 891

  Fly   955 SCSSWAEQTDAEQKVHHRHREESFSSSHSHDSAVQIKILQRPARQPSL-----SEESSTQQKQLP 1014
            .|.||        .|.|:.:....::|..         |:.|.::||.     .:|.|.:::..|
  Rat   892 ECGSW--------DVGHQPKAADMANSVE---------LEAPRQEPSFHVSSWEKEGSPKKQPNP 939

  Fly  1015 ----------ASPQQQ----KTLTTDPMPTQILRR-SVDIDKSGDER-----AEDKSALESDDKA 1059
                      :|.|||    :|..:.|:...:|:. .|:..:...||     .|:.|...::.:.
  Rat   940 EPEWTPEPRSSSGQQQEQPGRTRRSGPIKKPVLKALKVEEKEKALERVRQGLGEESSQRATEKEP 1004

  Fly  1060 KSAGKVEEDKSGNKRVSPRSGA---ACGGRGGRGYAGSSGGSSVGSGSSY--RGQRNASDWGSSR 1119
            ....:.:||:..|..::..|.|   ....|||.|:..|.......:..::  |..|.||:....:
  Rat  1005 PCRAEEDEDEENNPALANASSALEDKAAARGGFGHEASKLDEEAKTDKTWESRPSREASEIPPPK 1069

  Fly  1120 GSGGAGGRRYYGSGGEQSEHSEDVDEECYSSGGGGAARRSPKESGNGAPNSGASANKAGFSPRGE 1184
            .:...                 .:|||  .:.||.|..||                      ||.
  Rat  1070 RNNWI-----------------FIDEE--QAFGGRAQARS----------------------RGR 1093

  Fly  1185 PSRR--GRGGLSSGGGASASCYRRQPVGTGSAGGSG--SGGSGRSYGRLGYEEY--------GKQ 1237
            ..|.  .|||..:....|..|      |||..|..|  |||...:.|| |..::        .|.
  Rat  1094 GFREFTFRGGRPTSSSTSGLC------GTGVLGSRGMYSGGQRSNRGR-GLRDFPPPEDCPRAKP 1151

  Fly  1238 QRTSESETDLDKTKQNQLALSAGLHKPSKDDKDLP----ALGGE--------EKDKTAALAPAHN 1290
            :|...|||                |....:.::||    ..|.|        |:|:.|......:
  Rat  1152 RRRIASET----------------HSEGSEYEELPKRRRQRGSEPSHEGMLTERDEGALKDSWRS 1200

  Fly  1291 TALLAKDELQKDAAGRLP------LPPGLA--------------------APGSA---------V 1320
            .....:|:...||..|.|      |||.|:                    :||::         .
  Rat  1201 NRTYTEDQGSLDARSRGPRTCGRALPPRLSNCSYGRRTFVAKEPPHWQSRSPGNSWQEYGSSDPC 1265

  Fly  1321 GSVTATSSSVVVPG----------------------------AADKKKIESCAVVGGEKVTGSKL 1357
            |...||....:...                            .||.:..|:............|.
  Rat  1266 GPRRATDRDYIPDSYRHSDTFGSRLFEDSRTEDKKSFFQDDHGADSEGAENRPFRRRRPPRQDKP 1330

  Fly  1358 PAI----GEKTSLGAVGSGPSTSLLL------------DAGAPVN----TIIFENST-------- 1394
            |..    .|:.|||..|....:.||.            |...|..    .:.::||:        
  Rat  1331 PRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKSGPGGHRSPELSYQNSSDHANEEWE 1395

  Fly  1395 -------------YKQQAAAASVVTKPGTLSVSSSGATMTVDSLSSALSQMSFGGKATAAGSGDD 1446
                         .::..||.......|.||.:|.|.       ...|::.||..:...|    |
  Rat  1396 TASESSDFSERRERREGLAAEPEAQGDGGLSGASLGE-------KKELAKRSFSSQRPLA----D 1449

  Fly  1447 SQDMKL--GFSFGDDPTTPLKVVDNIDKTASQQQQQQQQQHSQQQQQQQQQQNNSTADLNMKIAS 1509
            .|..||  | .||:.|..|     ...:|:.:.:.||                 |...|     .
  Rat  1450 RQSRKLEPG-GFGEKPVRP-----GGGETSPRCESQQ-----------------SGTPL-----K 1486

  Fly  1510 VKKVWESATPMSDGP-SPAQVQQ------QQQQQPQQQQQSQVQVAAQQQQQQVVGPQQ------ 1561
            ||:..:.|.|...|. ||..:::      ...:...::.:.:|.:|||:..:|....:|      
  Rat  1487 VKRSPDEALPGGLGSHSPYALERTTHGSSDGSETTSKKTEKEVSLAAQRAGEQEEARKQFDLGYG 1551

  Fly  1562 ----------AGDDGS-GHMSAASFVAAVAASQHQQQHQQMPHYAVSAVHMQSHHHQQQQQQQQA 1615
                      .|::.. |.|....|:..:...|.:..                  .:::::::||
  Rat  1552 NAIIDNCGSSPGEENEVGSMVGEGFIEVLTKKQRRLL------------------EEERRKKEQA 1598

  Fly  1616 AVAAAQAQHHQQQQAQAHHQHHA------LSSPG---------------PVPGSHGHGYSHG--- 1656
            |....:....:.....|..|:..      ::.||               ||.|:....:...   
  Rat  1599 AQVKGRGLSSRIPPRFAKKQNGLCLEQGDVAVPGSSLGTEIWESSSQALPVQGAASDSWRTAVTA 1663

  Fly  1657 -SPFDAGSLEQQFQQE------DYPSPQQQQQAHQKTKQ-----LQQQQHLGMSPPPSQQQQQQH 1709
             |..:.|:.||.|:..      |..:..::..|....:.     |:..:..|  |..::.:...|
  Rat  1664 FSSAEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPDEMSG--PGLAESKADSH 1726

  Fly  1710 SQQ-QQQAQHQQQQQQAHQQQQQQQQP-----SFYQASPQFGVGGIPTIPSPP---AVVYNSSQM 1765
            ..| |:|::|:..:|.:.|.::.:..|     |........|...:.....||   ..::..|.:
  Rat  1727 KDQAQKQSEHKDSEQGSGQSKEHRPGPIGNERSLKNRKGSEGAERLQGAVVPPVNGVEIHVDSVL 1791

  Fly  1766 P-PPSQGGNLYAPFHSLDHSSRSPAYSAAAAAHSYP--NPYAAAAAAAAAAAAGGGPFNVNVNAY 1827
            | ||.:.|          .|.:...:|....:.|.|  ||.|......|:.|.......:....:
  Rat  1792 PVPPIEFG----------VSPKDSDFSLPPGSVSGPVGNPVAKLQDVLASNAGLTQSIPILRRDH 1846

  Fly  1828 AMQTPHGGSLPPTAPTPDMYSNLSSQFRLGGGPGPGPGPFGQPSSQQLSNPSNHAAVAIISSSSN 1892
            .:|...|.| |.:.||.|:...:.|..:...         ..||..:.::|..            
  Rat  1847 HIQRAIGLS-PMSFPTADLTLKMESARKAWE---------NSPSLPEQNSPGG------------ 1889

  Fly  1893 SMMSSGAAKPPQSQQTIGAIGSKSAGSGGGPGPGPGPYATTQTYMNLYAAPPPQHPGQGGPPPGA 1957
               :....:||.|   :||....:..|.||....|.|.|:        .||....||...||   
  Rat  1890 ---AGSGIQPPSS---VGASNGVNYSSFGGVSIPPMPVAS--------VAPSASMPGSHLPP--- 1937

  Fly  1958 HQLQSNSFYSNSAPGGPSGPQFYGGPPPQGNGGAQSYGLATAAGMYG-------------GHQGG 2009
            ..|..:.|.|.        |:......||    .|||..|..|....             |.:||
  Rat  1938 LYLDGHVFASQ--------PRLVPQTIPQ----QQSYQQAATAQQIPISLHTSLQAQAQLGLRGG 1990

  Fly  2010 PPGSNGPPGPPQSQHTMGTFNTPFMNSQL-----LTAASINQYRGG------------------- 2050
            .|.|       |||....:.. || .||:     |:..|.....||                   
  Rat  1991 LPAS-------QSQEIFSSLQ-PF-RSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMV 2046

  Fly  2051 -PTPGAAY--LKGNQ--------------GQTHMQDSMGRQLKSPL----SADMSLGLAKQVQSQ 2094
             |..|:.|  :.|||              |.:.|.||...||..||    |....|.|.:.:|..
  Rat  2047 KPQSGSPYQPMSGNQALVYEGQLGQAAGLGASQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLP 2111

  Fly  2095 PS------------PPHHKNYGAWDLQNQVLQQQQQQSQQQ------QQQQQRQVGGGNGPSMNA 2141
            |.            ||     |:   |..||...::.:|.:      ...:|....||:.||..|
  Rat  2112 PGQSLSVGAPRRIPPP-----GS---QPPVLNTSRESTQMELKGFHFADNKQNVSTGGSAPSPQA 2168

  Fly  2142 LGGRGSGAVGSGSGNGGGGGGGAGGSQVGGNGGGNGVGSVGQSGGGGQGRYPTPIQRPNNYPQHP 2206
            .  |.|.|..||.         ..||.|       .:|||       ||.|....:|.:..|...
  Rat  2169 Y--RPSSASPSGK---------PSGSAV-------NMGSV-------QGHYVQQAKRVDEKPSLG 2208

  Fly  2207 QQQQQQQQQQQQQREQAAAAAVAAQRAQNMR 2237
            ..:.|:......|.::..|....|.:.:..:
  Rat  2209 TVKLQEASSATSQMKRTGAIKPRAVKVEGSK 2239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nocteNP_001245614.1 BAT2_N 1..155 CDD:284431 44/152 (29%)
Prrc2bXP_006234067.1 BAT2_N 1..189 CDD:399768 73/290 (25%)
PHA03247 <1917..2185 CDD:223021 75/318 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 155 1.000 Domainoid score I4137
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I4106
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001844
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.050

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