DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and RABA1c

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_199387.1 Gene:RABA1c / 834614 AraportID:AT5G45750 Length:216 Species:Arabidopsis thaliana


Alignment Length:190 Identity:72/190 - (37%)
Similarity:116/190 - (61%) Gaps:10/190 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :||||||:::||||||||.||.||:.:.|:.:...|:|::...||:.:..:|:..|:|||:|.:|
plant    10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQER 74

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            :.::..:.||.|.|.|||||:|...:|:|::.|:||:|......:.|:|||||||..:...|..|
plant    75 YRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTE 139

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAES 193
            ...::|.:.:|.|.|.||....||.:.|:.:...|:|          :.|::..|.|:||
plant   140 DAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHH----------IVSKKAMEAASES 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 62/156 (40%)
RABA1cNP_199387.1 Rab11_like 11..175 CDD:206660 65/163 (40%)

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