DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and RAB1C

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_193486.1 Gene:RAB1C / 827468 AraportID:AT4G17530 Length:202 Species:Arabidopsis thaliana


Alignment Length:168 Identity:76/168 - (45%)
Similarity:110/168 - (65%) Gaps:0/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :|||||:|::|||||||||||:||:||.:.:.|:.|:|:|.|.|:||...:.:.||:|||:|.:|
plant     5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            |.::..|.||.||||::.||:|..:||.|:..|:.||.|...:.|..||||||.|..:.:.||.|
plant    70 FRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTSQKVVSTE 134

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHR 171
            ....:|....:.|.|.|||:..||.:.|.::...|..|
plant   135 TAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 71/156 (46%)
RAB1CNP_193486.1 Rab1_Ypt1 7..172 CDD:206661 74/164 (45%)

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