DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX2 and rabl2b

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001072451.1 Gene:rabl2b / 779905 XenbaseID:XB-GENE-979695 Length:225 Species:Xenopus tropicalis


Alignment Length:197 Identity:59/197 - (29%)
Similarity:102/197 - (51%) Gaps:15/197 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKRFNSLM 73
            |::.||||.||||.|:.||..|.|..:.|.|..:.:...|..:....:::..|||:|.:||:|:.
 Frog    23 KIICLGDSAVGKSKLMERFLMDGFRPQQLSTFALTLYKYSTCVDGNTVLVDFWDTAGQERFHSMH 87

  Fly    74 PSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQ-GFN 137
            .|.|..||..::|:|:....:::|:..|.:|:|...|: :..::|.||.|    ..:.:.| |||
 Frog    88 ASYYHKAHACIMVFDVQRKITYKNLGKWYQELREYRPE-IPCIVVANKID----ADIRVTQKGFN 147

  Fly   138 YAHRGALGFEEVSAKSGMNVYDIF-SSLAMDIYHRYVLHNPISPMPSE--------QEEEDAAES 193
            :..:..|.|..|||..|.||..:| .::.:.:.::....:.:..:..|        ||.||.:|.
 Frog   148 FGKKHNLPFYFVSAADGTNVVKLFKDAIKLAVSYKQNSQDFLDEVMRELENFELEKQEAEDLSEK 212

  Fly   194 PD 195
            .|
 Frog   213 ED 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 52/157 (33%)
rabl2bNP_001072451.1 RabL2 22..182 CDD:133324 52/163 (32%)

Return to query results.
Submit another query.