DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and rab12

DIOPT Version :9

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:XP_002937521.2 Gene:rab12 / 779581 XenbaseID:XB-GENE-492791 Length:248 Species:Xenopus tropicalis


Alignment Length:190 Identity:77/190 - (40%)
Similarity:115/190 - (60%) Gaps:8/190 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKRF 69
            |:..:|:::|..||||:.|:.||:||.|.|....|:|:|.|.::|||..:.:.||:|||:|.:||
 Frog    44 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 108

  Fly    70 NSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQ 134
            ||:..:.||||.||:||||||..::|:::..|||.|.:...::..:||||||.|....|:::.:|
 Frog   109 NSITSAYYRSAKGIILVYDITKKETFEDLPKWMKMIDKYASEEAELLLVGNKLDCETDREITRQQ 173

  Fly   135 GFNYAHR-GALGFEEVSAKSGMNVYDIFSSLAMDIYH-------RYVLHNPISPMPSEQE 186
            |..:|.: ..:.|.|.|||...||.:||..|..||..       |..|.|.|..:..|.|
 Frog   174 GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDLVRSELSNSILSLQPEPE 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 RAB 8..171 CDD:197555 70/170 (41%)
Rab 8..165 CDD:206640 67/157 (43%)
rab12XP_002937521.2 P-loop_NTPase 47..248 CDD:393306 76/187 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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