DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX2 and Rab1b

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_083852.1 Gene:Rab1b / 76308 MGIID:1923558 Length:201 Species:Mus musculus


Alignment Length:168 Identity:78/168 - (46%)
Similarity:113/168 - (67%) Gaps:0/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :|||||:|::|||||||||||:||:||.:||.|:.|:|:|.|.|::||..:.:.||:|||:|.:|
Mouse     5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            |.::..|.||.||||::|||:|..:|:.|:..|::||.|...:.|..||||||||....:.|...
Mouse    70 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNT 134

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHR 171
            ....:|....:.|.|.|||:..||...|.::|.:|..|
Mouse   135 TAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 72/156 (46%)
Rab1bNP_083852.1 Rab1_Ypt1 7..172 CDD:206661 76/164 (46%)
Switch 1. /evidence=ECO:0000250|UniProtKB:Q9H0U4 30..45 7/14 (50%)
Switch 2 region, required for interaction with REP1/CHM. /evidence=ECO:0000250|UniProtKB:Q9H0U4 64..83 8/18 (44%)
Switch 2. /evidence=ECO:0000250|UniProtKB:Q9H0U4 65..80 5/14 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.