DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and rab40c

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001035438.1 Gene:rab40c / 678600 ZFINID:ZDB-GENE-030515-1 Length:279 Species:Danio rerio


Alignment Length:169 Identity:69/169 - (40%)
Similarity:93/169 - (55%) Gaps:1/169 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :|||.|.|::|||.|||..:|....|......|..:.|||.|..::.|..|.:.|::|||||..|
Zfish    11 YDYLLKFLLVGDSDVGKGEILDSLQDGSAESPYAYSSGIDYKTTTILLDGRRVKLELWDTSGQGR 75

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            |.::..|..|.|.|||||||||:..||..||.|::||....|. |..:||||:......|||..|
Zfish    76 FCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIREIDEHAPG-VPRILVGNRLHLAFKRQVPTE 139

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHRY 172
            |...||.:..:.|.|||.....||.:.|:.|:..:..|:
Zfish   140 QARAYAEKNGMTFFEVSPLCNFNVIESFTELSRIVLMRH 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 64/156 (41%)
rab40cNP_001035438.1 Rab40 9..279 CDD:133321 69/169 (41%)
SOCS_Rab40 187..229 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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