DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rab43

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001019502.1 Gene:Rab43 / 500249 RGDID:1565300 Length:210 Species:Rattus norvegicus


Alignment Length:199 Identity:68/199 - (34%)
Similarity:120/199 - (60%) Gaps:13/199 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 HFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDK 67
            |:|:|||::::||:.|||:|::.||....|:.:...|:|:|...:::|:..:.:.||:|||:|.:
  Rat    12 HYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76

  Fly    68 RFNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSM 132
            ||.::..|.||||:|.:|.|||:...:|.::..|::::|:.....:..||:|||||..:.|:|.:
  Rat    77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPL 141

  Fly   133 EQGFNYA-HRGALGFEEVSAKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQ-------EEED 189
            .:..:.| |...|...|.|||...||.:.|:.:|.::..|:.     .||.||:       :.:|
  Rat   142 AEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHG-----GPMFSEKNTDHIQLDSKD 201

  Fly   190 AAES 193
            .|||
  Rat   202 IAES 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 55/157 (35%)
Rab43NP_001019502.1 Rab19 14..178 CDD:133267 58/163 (36%)
Effector region. /evidence=ECO:0000250 45..53 2/7 (29%)

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