DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rab19

DIOPT Version :9

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001019497.1 Gene:Rab19 / 500088 RGDID:1565263 Length:217 Species:Rattus norvegicus


Alignment Length:198 Identity:68/198 - (34%)
Similarity:112/198 - (56%) Gaps:17/198 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKRF 69
            ||||||:::|||.|||:|::..|....::|....|:|:|...||:|:..:.:.:|||||:|.:||
  Rat    15 DYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERF 79

  Fly    70 NSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQ 134
            .::..|.|||||..::.||:|...:|:::..|:.||.:.....:.::|:|||||....|.|..|.
  Rat    80 RTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFED 144

  Fly   135 GFNYAHR-GALGFEEVSAKSGMNVYDIFSSLAMDIYHRYVLH--------------NP--ISPMP 182
            ....|.: |.|...|.|||...|:.::|..:|.::..|..||              :|  ::.:|
  Rat   145 ACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIARNSLHLYGESAQQGLPQDSSPVLVAHVP 209

  Fly   183 SEQ 185
            ||:
  Rat   210 SER 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 RAB 8..171 CDD:197555 58/163 (36%)
Rab 8..165 CDD:206640 57/157 (36%)
Rab19NP_001019497.1 Rab19 15..179 CDD:133267 61/163 (37%)
Effector region. /evidence=ECO:0000250 46..54 2/7 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.870

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