DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and zgc:101559

DIOPT Version :9

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001007418.1 Gene:zgc:101559 / 492776 ZFINID:ZDB-GENE-041114-122 Length:233 Species:Danio rerio


Alignment Length:203 Identity:68/203 - (33%)
Similarity:107/203 - (52%) Gaps:31/203 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKRF-N 70
            :||::|:|||.|||:||..||...:|......|:|:|.:.|:::|....:.||:|||:|.:|| .
Zfish    36 VFKIIVIGDSNVGKTCLTYRFCGGKFLSNPEATIGVDFRERTLQLDGENIKLQIWDTAGQERFRK 100

  Fly    71 SLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEI-RRMCPDKVTVLLVGNKSDDPNHRQVS--- 131
            |::...||:.|.|:.|||:||..||:::..|::|. ....|..|..:|||||.|....|:||   
Zfish   101 SMVEHYYRNVHAIIFVYDVTSLASFESLPEWIEECNHHSVPPMVPRILVGNKCDLRESREVSTFL 165

  Fly   132 ---MEQGFNYAHRGALGFEEVSAK---SGMNVYDIFSSLAMDIYHRYVLHNPIS----------P 180
               :...:|:.      ..|.||:   ...:|..||.:||    :|...|.|:.          .
Zfish   166 AQRLADSYNFP------LFETSARDLAEKEHVDAIFLTLA----YRLKNHRPLRLKQPSESNFIQ 220

  Fly   181 MPSEQEEE 188
            :.:||||:
Zfish   221 LAAEQEEK 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 RAB 8..171 CDD:197555 61/173 (35%)
Rab 8..165 CDD:206640 59/167 (35%)
zgc:101559NP_001007418.1 Rab33B_Rab33A 35..204 CDD:133315 62/177 (35%)
RAB 37..204 CDD:197555 62/176 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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