DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX2 and zgc:100918

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001005591.1 Gene:zgc:100918 / 449549 ZFINID:ZDB-GENE-040927-2 Length:205 Species:Danio rerio


Alignment Length:194 Identity:60/194 - (30%)
Similarity:105/194 - (54%) Gaps:19/194 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKRFNS 71
            |.||::||||||||:.|:.::.:.:|:.:|..|:|.|...:.|.:..|::.:|:|||:|.:||.|
Zfish     8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72

  Fly    72 LMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMC----PDKVTVLLVGNKSDDPNHRQVSM 132
            |..:.||.|...:||||:|:..:|:.:|.|..|.....    |:....:::|||.|..| |||:.
Zfish    73 LGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVTT 136

  Fly   133 EQGFNYAH-RGALGFEEVSAKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPD 195
            ::...:.. :..:.:.|.|||..:||...|.::|.:..             .::.|.:..:.||
Zfish   137 KRAQAWCQSKSNIPYFETSAKEAINVDQAFQTIARNAL-------------KQESEVETYDFPD 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 55/161 (34%)
zgc:100918NP_001005591.1 Rab7 9..179 CDD:206655 56/183 (31%)

Return to query results.
Submit another query.