DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and rab40b

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001002524.2 Gene:rab40b / 436797 ZFINID:ZDB-GENE-040718-257 Length:287 Species:Danio rerio


Alignment Length:179 Identity:69/179 - (38%)
Similarity:95/179 - (53%) Gaps:8/179 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSH-------FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMML 58
            |:|       :|:|.|.|::|||.|||..:|....|......|...||||.|..::.|..|.:.|
Zfish     9 MNHRSSPAKAYDFLLKFLLVGDSDVGKGEILASLQDGSSESPYGYNMGIDYKTTTILLDGRRVKL 73

  Fly    59 QVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSD 123
            |:|||||..||.::..|..|.|.|::||||||:..||..||.|:|||....|. |..:||||:..
Zfish    74 QLWDTSGQGRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLH 137

  Fly   124 DPNHRQVSMEQGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHRY 172
            ....|||:.|....:..|..:.|.|||.....|:.:.|:.||..:..|:
Zfish   138 LAYKRQVTTEHTQAFVERLGVTFFEVSPLCNFNITESFTELARIVLMRH 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 62/156 (40%)
rab40bNP_001002524.2 Rab40 17..194 CDD:133321 67/171 (39%)
SOCS_Rab40 195..237 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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