DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rabl6

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001102043.1 Gene:Rabl6 / 362084 RGDID:1307615 Length:731 Species:Rattus norvegicus


Alignment Length:149 Identity:37/149 - (24%)
Similarity:69/149 - (46%) Gaps:28/149 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKA--RSVELVSRVMMLQVWDT----S 64
            |..|:::.||...||:.|..|....:|.|:|:.|..|.|.:  .:.:....|:.::|||.    .
  Rat    42 YNMKIVIRGDRNTGKTALWHRLQGKKFVEEYIPTQEIQVTSIHWNYKTTDDVVKVEVWDVVDKGK 106

  Fly    65 GDKRFNSLMPSN------------------YRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPD 111
            ..||.:.|...|                  |::.:|:::::|||...:|..:   ::|:.:: |.
  Rat   107 CKKRGDCLKTENDPQEAESEMALDAEFLDVYKNCNGVVMMFDITKQWTFNYV---LRELPKV-PT 167

  Fly   112 KVTVLLVGNKSDDPNHRQV 130
            .|.|.::||..|...||.:
  Rat   168 HVPVCVLGNYRDMGEHRVI 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 36/147 (24%)
Rabl6NP_001102043.1 P-loop containing Nucleoside Triphosphate Hydrolases 44..221 CDD:476819 36/147 (24%)
PHA03307 303..>549 CDD:223039
Blue background indicates that the domain is not in the aligned region.

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