DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rab40

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster


Alignment Length:178 Identity:66/178 - (37%)
Similarity:94/178 - (52%) Gaps:13/178 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSD----------DRFTEKYLRTMGIDVKARSVELVSRVMML 58
            :|||.|||::|||.|||..:|....|          :..|...|:|  :..|..::.|..:.:.|
  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQT--VAYKTTTILLEGKRVKL 70

  Fly    59 QVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSD 123
            |:|||||..||.:::.|..|.|.||:||||||:..||..||.|:||:....|. :..:||||:..
  Fly    71 QLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVGNRLH 134

  Fly   124 DPNHRQVSMEQGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHR 171
            ....|||:.:|...||.|..:...|:|.....|:.:.|..||....||
  Fly   135 LAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHR 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 59/166 (36%)
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 66/178 (37%)
SOCS 192..234 CDD:470605
Blue background indicates that the domain is not in the aligned region.

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