DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rab9Db

DIOPT Version :9

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster


Alignment Length:198 Identity:143/198 - (72%)
Similarity:163/198 - (82%) Gaps:4/198 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVM--MLQVWDT 63
            ||.:|..||:::||||||||:||||||||::|||::..|:|:|.:..|||.....|  |||||||
  Fly     1 MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDT 65

  Fly    64 SGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHR 128
            |.|:||..|..:..||||||||||||||||||||||||||||||:||||||||||||||||||||
  Fly    66 SDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNKSDDPNHR 130

  Fly   129 QVSMEQGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIY-HRYVLHNPISPMPSEQEEEDAAE 192
            ||||.||||||||.::.|||||||||.|||||||||||||| :|.|.:||.| :.|.||||||.|
  Fly   131 QVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFS-LTSWQEEEDAEE 194

  Fly   193 SPD 195
            |.|
  Fly   195 SLD 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 RAB 8..171 CDD:197555 125/165 (76%)
Rab 8..165 CDD:206640 119/158 (75%)
Rab9DbNP_572642.1 RAB 8..171 CDD:197555 123/162 (76%)
Rab 8..167 CDD:206640 119/158 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464159
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 1 1.000 - - FOG0009971
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47980
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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