DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX2 and Rab40c

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_631893.1 Gene:Rab40c / 224624 MGIID:2183454 Length:281 Species:Mus musculus


Alignment Length:169 Identity:70/169 - (41%)
Similarity:93/169 - (55%) Gaps:1/169 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :|||.|.|::|||.|||..:|....|......|..:.|||.|..::.|..|.:.|::|||||..|
Mouse    11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGR 75

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            |.::..|..|.|.|||||||||:..||..||.|:|||....|. |..:||||:......|||..|
Mouse    76 FCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-VPRILVGNRLHLAFKRQVPTE 139

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHRY 172
            |...||.:..:.|.|||.....||.:.|:.|:..:..|:
Mouse   140 QARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRH 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 65/156 (42%)
Rab40cNP_631893.1 Rab40 9..281 CDD:133321 70/169 (41%)
Switch-I. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 41..49 1/7 (14%)
Switch-II. /evidence=ECO:0000255|PROSITE-ProRule:PRU00753 72..88 5/15 (33%)
SOCS_Rab40 187..229 CDD:239711
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..281
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.