DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX2 and Rab1a

DIOPT Version :10

Sequence 1:NP_572627.1 Gene:RabX2 / 31971 FlyBaseID:FBgn0030200 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_033022.1 Gene:Rab1a / 19324 MGIID:97842 Length:205 Species:Mus musculus


Alignment Length:168 Identity:78/168 - (46%)
Similarity:112/168 - (66%) Gaps:0/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVELVSRVMMLQVWDTSGDKR 68
            :|||||:|::|||||||||||:||:||.:||.|:.|:|:|.|.|::||..:.:.||:|||:|.:|
Mouse     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72

  Fly    69 FNSLMPSNYRSAHGILLVYDITSSKSFQNIDGWMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSME 133
            |.::..|.||.||||::|||:|..:||.|:..|::||.|...:.|..||||||.|....:.|...
Mouse    73 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 137

  Fly   134 QGFNYAHRGALGFEEVSAKSGMNVYDIFSSLAMDIYHR 171
            ....:|....:.|.|.|||:..||...|.::|.:|..|
Mouse   138 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX2NP_572627.1 Rab 8..165 CDD:206640 72/156 (46%)
Rab1aNP_033022.1 Rab1_Ypt1 10..175 CDD:206661 76/164 (46%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 34..48 6/13 (46%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 66..83 7/16 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..205
Blue background indicates that the domain is not in the aligned region.

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