DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17841 and Cln8

DIOPT Version :10

Sequence 1:NP_572622.1 Gene:CG17841 / 31965 FlyBaseID:FBgn0028480 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_001007687.1 Gene:Cln8 / 306619 RGDID:1359518 Length:288 Species:Rattus norvegicus


Alignment Length:282 Identity:63/282 - (22%)
Similarity:100/282 - (35%) Gaps:76/282 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 KIVSAIQ-ASFSFFVGL-IVC-KSTCTKSFVYASHFLMEAYGW--------FGTAYFMYDIWSMY 188
            ||.|.:. |.|.|::|: :|| :.:.:.:..|.|....|...|        ||.......:|::.
  Rat    22 KIRSTLAVAGFVFYLGVFVVCHQLSSSLNATYRSLLAKEKVFWNLAATRAVFGIQSTAAGLWALL 86

  Fly   189 KVHTQKIADKLHLLRITKGQGAVVSNGHANGKVNGKSASGNNNG-----STPTNLHEICDYDGAC 248
                              |...:.||          .|.|..|.     :|.|...   .::.|.
  Rat    87 ------------------GDPVLYSN----------KALGQQNWCWFHITTATGFF---FFENAA 120

  Fly   249 VQIPKDGRWDFLKYVVTHPVMMIHHV--FIGTFGLLVVTYIRGGGHCIYSYMFMMEFSTPFVSLR 311
            |.:..      |.:......:::||:  |:|..|..|  .:| .||.:.....::|.||||..:.
  Rat   121 VHLSN------LFFRTFDLFLVVHHLFAFLGFLGSAV--NLR-AGHYLAMTTLLLEMSTPFTCVS 176

  Fly   312 SILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWRYSLAIEAASLWSAMWGLPRGCLISIA 376
            .:|.......|..:..|..||:..|. ||:.: .|.||....     ..|.|:          .:
  Rat   177 WMLLKAGWSHSLFWKVNQWLMIHMFH-CRMIL-TYHMWWVCF-----QHWDAL----------AS 224

  Fly   377 ILFLPQLYWFYLMVLGALKVFL 398
            .|:||.|..| |..|..|.|.:
  Rat   225 SLYLPHLALF-LFGLALLTVII 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17841NP_572622.1 TLC 127..397 CDD:214789 62/279 (22%)
Cln8NP_001007687.1 TLC 64..262 CDD:214789 51/240 (21%)
ER-retrieval signal. /evidence=ECO:0000250 285..288
Blue background indicates that the domain is not in the aligned region.

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