DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0289 and plxdc1

DIOPT Version :9

Sequence 1:NP_001303555.1 Gene:l(1)G0289 / 31964 FlyBaseID:FBgn0028331 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_012808384.1 Gene:plxdc1 / 101732893 XenbaseID:XB-GENE-856488 Length:501 Species:Xenopus tropicalis


Alignment Length:426 Identity:146/426 - (34%)
Similarity:211/426 - (49%) Gaps:62/426 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 DFHEYYNS-VLYENKDEVASLWTEL------KATPENIMLSSSHRRAMTVELKFDFPFYGHFVRN 271
            |.:.||.| |...::.....||.:|      ||...:| ||::||:|..:.|.||||||||.:|:
 Frog    80 DSYNYYTSRVFGPSEHRAMELWVDLLQEKGSKARVHSI-LSNTHRQASRLILSFDFPFYGHPLRH 143

  Fly   272 ITVATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPD 336
            :|||||||::.|:.:|..|.||||:|||||||:.|.|.:|.:...||||:|...|:.|.|.:|.|
 Frog   144 VTVATGGFIFMGDVLHRMLTATQYVAPLMANFNPSYSTNSTISYRDNGTSFIVQWDKVPLHEKED 208

  Fly   337 FGKFTFSVTLYQSGDIVFAYMLVPTNINSIQDKEHPVKVGLSDAYII---DKQLFFARRKTIYEY 398
            .|.|||...|::.|.|||.|..:|..:..|...:||||.|||||:::   ..::..:||::||||
 Frog   209 AGGFTFQTALHKDGRIVFGYKEIPLPVQDISSAQHPVKAGLSDAFMVLNSGPEVPESRRRSIYEY 273

  Fly   399 HRVTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCSTGTDRKKHEWLQM 463
            |:|......|.:.|.::....||||....|..|::....|.|.||.||||||:|.||.:.:||..
 Frog   274 HKVQLDLSRIRSQTAVEFIPLPTCLQQTSCEQCVSSVPRFNCSWCHVLNRCSSGFDRYRQDWLTY 338

  Fly   464 GCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGASANGATNTS---TSSSG---SSTPVTEPS 522
            ||...:..||  |.|..|...                   .||.|   ||..|   :.||.....
 Frog   339 GCAQQSQSTS--CEAFTDPYT-------------------PTNASLPPTSKEGDQWTPTPSGFSE 382

  Fly   523 VMSTR-APHATAYIKPGVDHSSDIHADGKVGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWL 586
            |::|. ....|.|::                 .|:....|...:.|...|.::.:.|:..:.|.:
 Frog   383 VLTTEDDTKLTPYVE-----------------GEIPTQTAPTVHSGTIVGIVLAVLLIAVIILAV 430

  Fly   587 FYAYRNPHTKSGQLLIQFRPSQWSWR-----RGEAR 617
            .|..|:...:..:...|.| :.|.|:     :||.|
 Frog   431 IYISRHSGKQGRRCCAQVR-TTWQWKTLPRHKGEYR 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0289NP_001303555.1 PSI 421..477 CDD:279745 24/55 (44%)
plxdc1XP_012808384.1 NIDO 157..266 CDD:383068 47/108 (44%)
MGC-24 296..426 CDD:368370 44/167 (26%)
PSI 297..340 CDD:214655 19/42 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 238 1.000 Inparanoid score I3287
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1361987at2759
OrthoFinder 1 1.000 - - FOG0003589
OrthoInspector 1 1.000 - - oto102720
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2460
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.060

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