DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hk and kcnab1

DIOPT Version :9

Sequence 1:NP_001259401.1 Gene:Hk / 31955 FlyBaseID:FBgn0263220 Length:887 Species:Drosophila melanogaster
Sequence 2:XP_012818504.1 Gene:kcnab1 / 549740 XenbaseID:XB-GENE-950688 Length:429 Species:Xenopus tropicalis


Alignment Length:354 Identity:169/354 - (47%)
Similarity:245/354 - (69%) Gaps:28/354 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 LPLRHGSTPTPGLRYKNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA 255
            |...|......|:.|:||||||||:|.:|||||..|...:||:.||.::.:|.|:|:||||.:|.
 Frog    87 LSYEHTVACRTGMPYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYENGVNLFDTAEV 151

  Fly   256 H----SETEIGKILQRAGWKRTAYVITTKVYWSTKSE-ERGLSRKHIIECVRASLQRLQLQYIDI 315
            :    :|..:|.|:::..|:|::.|||||:||..|:| |||||||||||.::|||||:||:|:|:
 Frog   152 YAAGKAEIILGNIIRKKNWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKASLQRMQLEYVDV 216

  Fly   316 VIIHKADPMCPM-EVVRAMSYVIQQGWAMYWGTARWSQVEIMEAYTNCRQFNCITPIVEQSEYHM 379
            |..::.|...|| |:||||||||.||.||||||:|||.:||||||:..||||.|.|:.||:|||:
 Frog   217 VFANRPDNNTPMEEIVRAMSYVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHL 281

  Fly   380 FCREKCELYLPEMYNKIGVGLMAWGPLSMAL--SDTQNGDKLFLPKGS-FKTKSFSWTEDEINRN 441
            |.|||.|:.|||:|:|||||.|.|.||:..:  ...:||    :|:.: ...|.:.|.:|:|   
 Frog   282 FQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYENG----VPESTRASLKCYQWLKDKI--- 339

  Fly   442 AALSPQGSWGKDRIDEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQL 506
              ||          :|||:...:||||..:||:|||:..||::||.|::|.|..:|||:::.|||
 Frog   340 --LS----------EEGRKQRTKLRDLMPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSNPEQL 392

  Fly   507 HQSLQSLQLLPRLSSSVMLELERILENKP 535
            .::|.::|:||:::|.::.|::.||.|||
 Frog   393 IENLGAIQVLPKMTSHIVNEVDNILGNKP 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HkNP_001259401.1 Kv_beta 205..531 CDD:213602 161/334 (48%)
Aldo_ket_red 218..531 CDD:278668 151/321 (47%)
kcnab1XP_012818504.1 Kv_beta 101..417 CDD:213602 161/334 (48%)
Aldo_ket_red 101..416 CDD:119408 161/333 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 300 1.000 Domainoid score I1407
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H56491
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000530
OrthoInspector 1 1.000 - - otm49174
Panther 1 1.100 - - O PTHR43150
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X715
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.010

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